miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26331 3' -64.7 NC_005345.2 + 777 1.07 0.000136
Target:  5'- cAGCGCAGCGCCGUCGCCUCGCCCCACc -3'
miRNA:   3'- -UCGCGUCGCGGCAGCGGAGCGGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 2260 0.66 0.243887
Target:  5'- cGCGC-GCGCCaUCgGCgUUGCaCCCGCc -3'
miRNA:   3'- uCGCGuCGCGGcAG-CGgAGCG-GGGUG- -5'
26331 3' -64.7 NC_005345.2 + 2444 0.68 0.191426
Target:  5'- cGGCGCGcgacggggaggucacGCGCCGUUGCg-CGaUCCCGCc -3'
miRNA:   3'- -UCGCGU---------------CGCGGCAGCGgaGC-GGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 2619 0.68 0.170867
Target:  5'- cGCGCuggaucGGgGCCGgCGCCgggUGCCCCGu -3'
miRNA:   3'- uCGCG------UCgCGGCaGCGGa--GCGGGGUg -5'
26331 3' -64.7 NC_005345.2 + 2786 0.66 0.230895
Target:  5'- cGCGUccAGUGaucuucgaaaCCGUCGCCaggcugaucccgCGCCCCGCc -3'
miRNA:   3'- uCGCG--UCGC----------GGCAGCGGa-----------GCGGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 3722 0.66 0.237908
Target:  5'- aGGUGCAGCuGaUCGuUCGCC-CGCgCCGCc -3'
miRNA:   3'- -UCGCGUCG-C-GGC-AGCGGaGCGgGGUG- -5'
26331 3' -64.7 NC_005345.2 + 3936 0.67 0.194392
Target:  5'- cAGCGCAGggaCGCCGaCGCCgaucaGCCggguCCGCa -3'
miRNA:   3'- -UCGCGUC---GCGGCaGCGGag---CGG----GGUG- -5'
26331 3' -64.7 NC_005345.2 + 4302 0.67 0.204571
Target:  5'- gGGCGCcucggagaucaAGCacCCGUCGaugCGCCCCACc -3'
miRNA:   3'- -UCGCG-----------UCGc-GGCAGCggaGCGGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 4331 0.77 0.035081
Target:  5'- aGGCGCAGCaaCGUgGCCUCGCCcgcuCCGCa -3'
miRNA:   3'- -UCGCGUCGcgGCAgCGGAGCGG----GGUG- -5'
26331 3' -64.7 NC_005345.2 + 5686 0.71 0.108872
Target:  5'- cGCGCuGCGCCGcgaacUCGCCgcCGUCCCuCg -3'
miRNA:   3'- uCGCGuCGCGGC-----AGCGGa-GCGGGGuG- -5'
26331 3' -64.7 NC_005345.2 + 5693 0.67 0.215209
Target:  5'- cGGCGaucaccGCGUCGgccacgaGCCcggCGCCCCACg -3'
miRNA:   3'- -UCGCgu----CGCGGCag-----CGGa--GCGGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 5745 0.78 0.032245
Target:  5'- cGGCGCAGCGCgGUCGgCUCGgUCCGg -3'
miRNA:   3'- -UCGCGUCGCGgCAGCgGAGCgGGGUg -5'
26331 3' -64.7 NC_005345.2 + 5849 0.66 0.231473
Target:  5'- cGGCuGUGGCG-CGUCGaCCUCGCCgaggacgucgucgCCACc -3'
miRNA:   3'- -UCG-CGUCGCgGCAGC-GGAGCGG-------------GGUG- -5'
26331 3' -64.7 NC_005345.2 + 7230 0.66 0.25622
Target:  5'- uGCGaCAGCGgguccgacCCGUCccggGCCacgUGCCCCGCc -3'
miRNA:   3'- uCGC-GUCGC--------GGCAG----CGGa--GCGGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 7599 0.66 0.258747
Target:  5'- gAGCGC-GCGCaCGacgucgucgaccaggUCGCCgagacgcucgCGCUCCGCg -3'
miRNA:   3'- -UCGCGuCGCG-GC---------------AGCGGa---------GCGGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 7901 0.67 0.199425
Target:  5'- cAGCuGCcgAGCGCCcugCGUCUCGCucaCCCGCu -3'
miRNA:   3'- -UCG-CG--UCGCGGca-GCGGAGCG---GGGUG- -5'
26331 3' -64.7 NC_005345.2 + 7973 0.72 0.080727
Target:  5'- gAGCGCgucauacgAGCaGCCGUgCGCCgccucggCGUCCCACg -3'
miRNA:   3'- -UCGCG--------UCG-CGGCA-GCGGa------GCGGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 9081 0.69 0.158003
Target:  5'- cGgGC--CGCCGUCGCCggcgacCGCCCgCACg -3'
miRNA:   3'- uCgCGucGCGGCAGCGGa-----GCGGG-GUG- -5'
26331 3' -64.7 NC_005345.2 + 9682 0.68 0.189471
Target:  5'- gAGCGCAuGCG-CGagGCaCUCGCUCUGCa -3'
miRNA:   3'- -UCGCGU-CGCgGCagCG-GAGCGGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 9735 0.74 0.061289
Target:  5'- cGGCGCucGCGguaCGUCaGCC-CGCCCCACa -3'
miRNA:   3'- -UCGCGu-CGCg--GCAG-CGGaGCGGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.