Results 1 - 20 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26361 | 3' | -63.4 | NC_005345.2 | + | 26375 | 0.66 | 0.337403 |
Target: 5'- gCGGAUCCcu-CCCGAGGugaCCGAguGCCCGa -3' miRNA: 3'- -GCUUGGGcucGGGCUCC---GGCU--CGGGC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 37402 | 0.66 | 0.300384 |
Target: 5'- ----aCCGAGCCCGAcgaaGGCggCGAGCCg- -3' miRNA: 3'- gcuugGGCUCGGGCU----CCG--GCUCGGgc -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 30084 | 0.66 | 0.329741 |
Target: 5'- gCGAGCaCGGcCCCGAgacGGCCGGGUUCGc -3' miRNA: 3'- -GCUUGgGCUcGGGCU---CCGGCUCGGGC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 31446 | 0.66 | 0.337403 |
Target: 5'- aCGGGuCCCGucgCCGAGGCCG-GCgCGg -3' miRNA: 3'- -GCUU-GGGCucgGGCUCCGGCuCGgGC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 17773 | 0.66 | 0.30753 |
Target: 5'- aGGACCC--GCCCGuGaCCGAucGCCCGa -3' miRNA: 3'- gCUUGGGcuCGGGCuCcGGCU--CGGGC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 37556 | 0.66 | 0.30753 |
Target: 5'- cCGGcACCUcGGCCCGAGGC-GGGCgCa -3' miRNA: 3'- -GCU-UGGGcUCGGGCUCCGgCUCGgGc -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 43880 | 0.66 | 0.30753 |
Target: 5'- cCGAccCCCGAGCCCGcccuGCC--GCCCGu -3' miRNA: 3'- -GCUu-GGGCUCGGGCuc--CGGcuCGGGC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 20584 | 0.66 | 0.314804 |
Target: 5'- ---uCCCGGGCCCaaauccGGGGCCGGcgggcGCUCGc -3' miRNA: 3'- gcuuGGGCUCGGG------CUCCGGCU-----CGGGC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 12047 | 0.66 | 0.322208 |
Target: 5'- cCGAGCUgGAGaCCGGcGCCGAGUUCa -3' miRNA: 3'- -GCUUGGgCUCgGGCUcCGGCUCGGGc -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 34008 | 0.66 | 0.306809 |
Target: 5'- uGAACCC--GCCCGAcccgcaggacgggGGCCGGaccGUCCGg -3' miRNA: 3'- gCUUGGGcuCGGGCU-------------CCGGCU---CGGGC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 10632 | 0.66 | 0.30753 |
Target: 5'- aCGGGCCCac-CCCGGGGCuCGccauggucGCCCGg -3' miRNA: 3'- -GCUUGGGcucGGGCUCCG-GCu-------CGGGC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 39098 | 0.66 | 0.314804 |
Target: 5'- uCGAACCCGAucgcGUCCucGGCgaGcAGCCCGc -3' miRNA: 3'- -GCUUGGGCU----CGGGcuCCGg-C-UCGGGC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 32079 | 0.66 | 0.337403 |
Target: 5'- uCGGGCUCG-GCCUcGGGCuCGGGUUCGa -3' miRNA: 3'- -GCUUGGGCuCGGGcUCCG-GCUCGGGC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 3449 | 0.66 | 0.337403 |
Target: 5'- gCGGGcCCCGAGCUCGcgcGGGCUGucggacauGCCuCGa -3' miRNA: 3'- -GCUU-GGGCUCGGGC---UCCGGCu-------CGG-GC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 8258 | 0.66 | 0.329741 |
Target: 5'- cCGggUUCGAGCgCGGGGUucaCGAguGCCCu -3' miRNA: 3'- -GCuuGGGCUCGgGCUCCG---GCU--CGGGc -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 32049 | 0.66 | 0.329741 |
Target: 5'- uCGAcCUCGGGUUCGAGuuCGGGCUCGa -3' miRNA: 3'- -GCUuGGGCUCGGGCUCcgGCUCGGGC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 26974 | 0.66 | 0.329741 |
Target: 5'- aCGAACCCGAuCCC-AGcGCCGGcgcuGCUCGc -3' miRNA: 3'- -GCUUGGGCUcGGGcUC-CGGCU----CGGGC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 6511 | 0.66 | 0.329741 |
Target: 5'- gGAAcCCCGGGCCgGAcGGCaCGGGgCgGg -3' miRNA: 3'- gCUU-GGGCUCGGgCU-CCG-GCUCgGgC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 27130 | 0.66 | 0.322208 |
Target: 5'- gGGACCguccggCGGGCCCGGcauGCCGccgugcggcagcGGCCCGa -3' miRNA: 3'- gCUUGG------GCUCGGGCUc--CGGC------------UCGGGC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 21590 | 0.66 | 0.322208 |
Target: 5'- cCGGccGCCgGGGUCCGAcGaGCCGAuGCCgCGg -3' miRNA: 3'- -GCU--UGGgCUCGGGCU-C-CGGCU-CGG-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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