Results 1 - 20 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26361 | 3' | -63.4 | NC_005345.2 | + | 17066 | 1.08 | 0.000202 |
Target: 5'- uCGAACCCGAGCCCGAGGCCGAGCCCGa -3' miRNA: 3'- -GCUUGGGCUCGGGCUCCGGCUCGGGC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 17120 | 0.82 | 0.023261 |
Target: 5'- uCGAACCCGAGgUCGAGGUCGAaCCCGa -3' miRNA: 3'- -GCUUGGGCUCgGGCUCCGGCUcGGGC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 17156 | 0.82 | 0.023261 |
Target: 5'- uCGAACCCGAGgUCGAGGUCGAaCCCGa -3' miRNA: 3'- -GCUUGGGCUCgGGCUCCGGCUcGGGC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 16102 | 0.8 | 0.02829 |
Target: 5'- aCGAGCCCaacgucGAGCCgGAccgcaccccgcGGCCGAGCCCGa -3' miRNA: 3'- -GCUUGGG------CUCGGgCU-----------CCGGCUCGGGC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 48448 | 0.8 | 0.030761 |
Target: 5'- gGAGCaaGAGCCCGAGGCCGGGaucgcucaaCCCGu -3' miRNA: 3'- gCUUGggCUCGGGCUCCGGCUC---------GGGC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 36522 | 0.78 | 0.042946 |
Target: 5'- cCGAgGCCCGGuGCCCGA-GCCGuGCCCGg -3' miRNA: 3'- -GCU-UGGGCU-CGGGCUcCGGCuCGGGC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 44868 | 0.77 | 0.047974 |
Target: 5'- cCGcAGCCCGAGCCCGAGcugcccgcaccGCCGguguucgccggcAGCCCGa -3' miRNA: 3'- -GC-UUGGGCUCGGGCUC-----------CGGC------------UCGGGC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 39184 | 0.77 | 0.050699 |
Target: 5'- gCGGACCCGcAGCCCGAacCCGGGCCgCGg -3' miRNA: 3'- -GCUUGGGC-UCGGGCUccGGCUCGG-GC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 19058 | 0.76 | 0.059806 |
Target: 5'- gCGAACCCG-GCCgucuCGGGGCCGuGCUCGc -3' miRNA: 3'- -GCUUGGGCuCGG----GCUCCGGCuCGGGC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 31179 | 0.76 | 0.064936 |
Target: 5'- uCGAGgCCGcGGCCCGGcaggcGGCCGAGCCgGa -3' miRNA: 3'- -GCUUgGGC-UCGGGCU-----CCGGCUCGGgC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 15455 | 0.75 | 0.072242 |
Target: 5'- aCGGcCCCGAGCCgcuucgccugcuuCG-GGUCGAGCCCGa -3' miRNA: 3'- -GCUuGGGCUCGG-------------GCuCCGGCUCGGGC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 30273 | 0.75 | 0.076289 |
Target: 5'- cCGGGCUcguCGAGCCCGAGcaGCCGAaggaguaGCCCGg -3' miRNA: 3'- -GCUUGG---GCUCGGGCUC--CGGCU-------CGGGC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 20974 | 0.74 | 0.090015 |
Target: 5'- aGAcacCCCGAGCCCcucAGGUCGAGCaCCGc -3' miRNA: 3'- gCUu--GGGCUCGGGc--UCCGGCUCG-GGC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 14684 | 0.74 | 0.090015 |
Target: 5'- cCGAugCCGGGCC---GGCCGuGCCCGu -3' miRNA: 3'- -GCUugGGCUCGGgcuCCGGCuCGGGC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 22988 | 0.74 | 0.090015 |
Target: 5'- gCGAACUCGGGCucgggguccucgCCGAGGUCGGGCauCCGg -3' miRNA: 3'- -GCUUGGGCUCG------------GGCUCCGGCUCG--GGC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 2560 | 0.73 | 0.097336 |
Target: 5'- gCGAguGCCCGGucgacguGCUCGGGGCCGAGgCUGa -3' miRNA: 3'- -GCU--UGGGCU-------CGGGCUCCGGCUCgGGC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 18445 | 0.73 | 0.097598 |
Target: 5'- gCGAACCUGcGCCCGugguGGaCCGGGuCCCGc -3' miRNA: 3'- -GCUUGGGCuCGGGCu---CC-GGCUC-GGGC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 19197 | 0.73 | 0.097598 |
Target: 5'- aCGAGCCCGAcgGcCCCGAcGUCGAGCCgGu -3' miRNA: 3'- -GCUUGGGCU--C-GGGCUcCGGCUCGGgC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 47932 | 0.73 | 0.099988 |
Target: 5'- gGGACCCGuaccgcgcggcguGGCCCGcGGGCCGGacugccgagccGCCCGu -3' miRNA: 3'- gCUUGGGC-------------UCGGGC-UCCGGCU-----------CGGGC- -5' |
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26361 | 3' | -63.4 | NC_005345.2 | + | 5792 | 0.73 | 0.102984 |
Target: 5'- cCGuACCCGGccgacCCCGAGGUCGAGCCg- -3' miRNA: 3'- -GCuUGGGCUc----GGGCUCCGGCUCGGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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