miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26361 3' -63.4 NC_005345.2 + 17066 1.08 0.000202
Target:  5'- uCGAACCCGAGCCCGAGGCCGAGCCCGa -3'
miRNA:   3'- -GCUUGGGCUCGGGCUCCGGCUCGGGC- -5'
26361 3' -63.4 NC_005345.2 + 44791 0.71 0.137935
Target:  5'- cCGAgcgGCCCGcccGCCCGAGGCagGAcCCCGg -3'
miRNA:   3'- -GCU---UGGGCu--CGGGCUCCGg-CUcGGGC- -5'
26361 3' -63.4 NC_005345.2 + 22018 0.71 0.144603
Target:  5'- -cAugCCGGGCCCGccggacggucccGGCCGAGCUCa -3'
miRNA:   3'- gcUugGGCUCGGGCu-----------CCGGCUCGGGc -5'
26361 3' -63.4 NC_005345.2 + 31446 0.66 0.337403
Target:  5'- aCGGGuCCCGucgCCGAGGCCG-GCgCGg -3'
miRNA:   3'- -GCUU-GGGCucgGGCUCCGGCuCGgGC- -5'
26361 3' -63.4 NC_005345.2 + 48448 0.8 0.030761
Target:  5'- gGAGCaaGAGCCCGAGGCCGGGaucgcucaaCCCGu -3'
miRNA:   3'- gCUUGggCUCGGGCUCCGGCUC---------GGGC- -5'
26361 3' -63.4 NC_005345.2 + 44868 0.77 0.047974
Target:  5'- cCGcAGCCCGAGCCCGAGcugcccgcaccGCCGguguucgccggcAGCCCGa -3'
miRNA:   3'- -GC-UUGGGCUCGGGCUC-----------CGGC------------UCGGGC- -5'
26361 3' -63.4 NC_005345.2 + 30273 0.75 0.076289
Target:  5'- cCGGGCUcguCGAGCCCGAGcaGCCGAaggaguaGCCCGg -3'
miRNA:   3'- -GCUUGG---GCUCGGGCUC--CGGCU-------CGGGC- -5'
26361 3' -63.4 NC_005345.2 + 20974 0.74 0.090015
Target:  5'- aGAcacCCCGAGCCCcucAGGUCGAGCaCCGc -3'
miRNA:   3'- gCUu--GGGCUCGGGc--UCCGGCUCG-GGC- -5'
26361 3' -63.4 NC_005345.2 + 19197 0.73 0.097598
Target:  5'- aCGAGCCCGAcgGcCCCGAcGUCGAGCCgGu -3'
miRNA:   3'- -GCUUGGGCU--C-GGGCUcCGGCUCGGgC- -5'
26361 3' -63.4 NC_005345.2 + 7052 0.71 0.137935
Target:  5'- uCGAggcgGCCCG-GCCgGAcuacgcGGCCGAGgCCCGg -3'
miRNA:   3'- -GCU----UGGGCuCGGgCU------CCGGCUC-GGGC- -5'
26361 3' -63.4 NC_005345.2 + 5792 0.73 0.102984
Target:  5'- cCGuACCCGGccgacCCCGAGGUCGAGCCg- -3'
miRNA:   3'- -GCuUGGGCUc----GGGCUCCGGCUCGGgc -5'
26361 3' -63.4 NC_005345.2 + 18445 0.73 0.097598
Target:  5'- gCGAACCUGcGCCCGugguGGaCCGGGuCCCGc -3'
miRNA:   3'- -GCUUGGGCuCGGGCu---CC-GGCUC-GGGC- -5'
26361 3' -63.4 NC_005345.2 + 17120 0.82 0.023261
Target:  5'- uCGAACCCGAGgUCGAGGUCGAaCCCGa -3'
miRNA:   3'- -GCUUGGGCUCgGGCUCCGGCUcGGGC- -5'
26361 3' -63.4 NC_005345.2 + 34161 0.72 0.114607
Target:  5'- aCGGAUCCGAGUCCucGGCCGAgggauucaaggcGCUCGg -3'
miRNA:   3'- -GCUUGGGCUCGGGcuCCGGCU------------CGGGC- -5'
26361 3' -63.4 NC_005345.2 + 17156 0.82 0.023261
Target:  5'- uCGAACCCGAGgUCGAGGUCGAaCCCGa -3'
miRNA:   3'- -GCUUGGGCUCgGGCUCCGGCUcGGGC- -5'
26361 3' -63.4 NC_005345.2 + 14684 0.74 0.090015
Target:  5'- cCGAugCCGGGCC---GGCCGuGCCCGu -3'
miRNA:   3'- -GCUugGGCUCGGgcuCCGGCuCGGGC- -5'
26361 3' -63.4 NC_005345.2 + 26625 0.72 0.116763
Target:  5'- cCGGuguGCCCGAGgacuacaCCGAGGCCGAGgugcggugggcgaaCCCGg -3'
miRNA:   3'- -GCU---UGGGCUCg------GGCUCCGGCUC--------------GGGC- -5'
26361 3' -63.4 NC_005345.2 + 6477 0.71 0.140863
Target:  5'- cCGAGCUguacggcggCGAGCCCGAGGCguggacgccgcaGGGCUCGa -3'
miRNA:   3'- -GCUUGG---------GCUCGGGCUCCGg-----------CUCGGGC- -5'
26361 3' -63.4 NC_005345.2 + 16102 0.8 0.02829
Target:  5'- aCGAGCCCaacgucGAGCCgGAccgcaccccgcGGCCGAGCCCGa -3'
miRNA:   3'- -GCUUGGG------CUCGGgCU-----------CCGGCUCGGGC- -5'
26361 3' -63.4 NC_005345.2 + 31179 0.76 0.064936
Target:  5'- uCGAGgCCGcGGCCCGGcaggcGGCCGAGCCgGa -3'
miRNA:   3'- -GCUUgGGC-UCGGGCU-----CCGGCUCGGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.