miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26361 3' -63.4 NC_005345.2 + 2042 0.68 0.224515
Target:  5'- gCGGGCCCGgcgcGGCCCGgcGGGCCGcGGCg-- -3'
miRNA:   3'- -GCUUGGGC----UCGGGC--UCCGGC-UCGggc -5'
26361 3' -63.4 NC_005345.2 + 2560 0.73 0.097336
Target:  5'- gCGAguGCCCGGucgacguGCUCGGGGCCGAGgCUGa -3'
miRNA:   3'- -GCU--UGGGCU-------CGGGCUCCGGCUCgGGC- -5'
26361 3' -63.4 NC_005345.2 + 3449 0.66 0.337403
Target:  5'- gCGGGcCCCGAGCUCGcgcGGGCUGucggacauGCCuCGa -3'
miRNA:   3'- -GCUU-GGGCUCGGGC---UCCGGCu-------CGG-GC- -5'
26361 3' -63.4 NC_005345.2 + 3564 0.67 0.253949
Target:  5'- -cGACCCGuucgcGGCCCccGGCCGcaaccGGCCCGc -3'
miRNA:   3'- gcUUGGGC-----UCGGGcuCCGGC-----UCGGGC- -5'
26361 3' -63.4 NC_005345.2 + 4289 0.67 0.28922
Target:  5'- uCGGGCUCGGGCugcgguucgacccauCCGAGGUCGA-CCUGc -3'
miRNA:   3'- -GCUUGGGCUCG---------------GGCUCCGGCUcGGGC- -5'
26361 3' -63.4 NC_005345.2 + 4469 0.68 0.224515
Target:  5'- gGGGCCCGgcggccguguccGGCUCGAcGaGCCGuGCCCa -3'
miRNA:   3'- gCUUGGGC------------UCGGGCU-C-CGGCuCGGGc -5'
26361 3' -63.4 NC_005345.2 + 5443 0.68 0.247819
Target:  5'- uCGua-UCGAGgUCGAGGCCG-GCCCa -3'
miRNA:   3'- -GCuugGGCUCgGGCUCCGGCuCGGGc -5'
26361 3' -63.4 NC_005345.2 + 5610 0.7 0.183008
Target:  5'- gGGGCgCCGGGCUCGuGGCCGAcgcggugaucgccGaCCCGa -3'
miRNA:   3'- gCUUG-GGCUCGGGCuCCGGCU-------------C-GGGC- -5'
26361 3' -63.4 NC_005345.2 + 5792 0.73 0.102984
Target:  5'- cCGuACCCGGccgacCCCGAGGUCGAGCCg- -3'
miRNA:   3'- -GCuUGGGCUc----GGGCUCCGGCUCGGgc -5'
26361 3' -63.4 NC_005345.2 + 6144 0.66 0.337403
Target:  5'- gCGGACCCGgucgcaccGGCUcauCGAGGUCcccuccGGCCCGg -3'
miRNA:   3'- -GCUUGGGC--------UCGG---GCUCCGGc-----UCGGGC- -5'
26361 3' -63.4 NC_005345.2 + 6477 0.71 0.140863
Target:  5'- cCGAGCUguacggcggCGAGCCCGAGGCguggacgccgcaGGGCUCGa -3'
miRNA:   3'- -GCUUGG---------GCUCGGGCUCCGg-----------CUCGGGC- -5'
26361 3' -63.4 NC_005345.2 + 6511 0.66 0.329741
Target:  5'- gGAAcCCCGGGCCgGAcGGCaCGGGgCgGg -3'
miRNA:   3'- gCUU-GGGCUCGGgCU-CCG-GCUCgGgC- -5'
26361 3' -63.4 NC_005345.2 + 7052 0.71 0.137935
Target:  5'- uCGAggcgGCCCG-GCCgGAcuacgcGGCCGAGgCCCGg -3'
miRNA:   3'- -GCU----UGGGCuCGGgCU------CCGGCUC-GGGC- -5'
26361 3' -63.4 NC_005345.2 + 8258 0.66 0.329741
Target:  5'- cCGggUUCGAGCgCGGGGUucaCGAguGCCCu -3'
miRNA:   3'- -GCuuGGGCUCGgGCUCCG---GCU--CGGGc -5'
26361 3' -63.4 NC_005345.2 + 8366 0.7 0.157189
Target:  5'- gGAACgCGAcacGCCCGcgccGGCCGAccgGCCCGa -3'
miRNA:   3'- gCUUGgGCU---CGGGCu---CCGGCU---CGGGC- -5'
26361 3' -63.4 NC_005345.2 + 9285 0.69 0.203098
Target:  5'- gCGAACUCGGucaggauguccuGCCaggugCGGccGGCCGAGCCCGc -3'
miRNA:   3'- -GCUUGGGCU------------CGG-----GCU--CCGGCUCGGGC- -5'
26361 3' -63.4 NC_005345.2 + 9444 0.7 0.16555
Target:  5'- -uGGCCCGAGCUCGucccGGGCgGuGUCCGg -3'
miRNA:   3'- gcUUGGGCUCGGGC----UCCGgCuCGGGC- -5'
26361 3' -63.4 NC_005345.2 + 9617 0.67 0.279721
Target:  5'- cCGGugCaCGAccuGCUCGAucGGCCGGGUCCa -3'
miRNA:   3'- -GCUugG-GCU---CGGGCU--CCGGCUCGGGc -5'
26361 3' -63.4 NC_005345.2 + 9956 0.67 0.266583
Target:  5'- -cAACCCGcGGCCCGgguucGGGCUgGGGUCCGc -3'
miRNA:   3'- gcUUGGGC-UCGGGC-----UCCGG-CUCGGGC- -5'
26361 3' -63.4 NC_005345.2 + 10632 0.66 0.30753
Target:  5'- aCGGGCCCac-CCCGGGGCuCGccauggucGCCCGg -3'
miRNA:   3'- -GCUUGGGcucGGGCUCCG-GCu-------CGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.