Results 1 - 20 of 179 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26361 | 5' | -53.2 | NC_005345.2 | + | 40597 | 0.65 | 0.867853 |
Target: 5'- cCCCGcgacggacgucaucAGCggCGuGCCCGAacGGUCGAGgCg -3' miRNA: 3'- -GGGC--------------UUGa-GCuUGGGCU--CCAGCUUgG- -5' |
|||||||
26361 | 5' | -53.2 | NC_005345.2 | + | 17306 | 0.66 | 0.836779 |
Target: 5'- gCCGGACgggCGAACCCGuccUUGA-CCa -3' miRNA: 3'- gGGCUUGa--GCUUGGGCuccAGCUuGG- -5' |
|||||||
26361 | 5' | -53.2 | NC_005345.2 | + | 44582 | 0.66 | 0.835013 |
Target: 5'- aCCGGACUCGGGCagcagucguacaCGcugccgucguccGGGUCGuGCCc -3' miRNA: 3'- gGGCUUGAGCUUGg-----------GC------------UCCAGCuUGG- -5' |
|||||||
26361 | 5' | -53.2 | NC_005345.2 | + | 41516 | 0.66 | 0.827862 |
Target: 5'- uCCCGAACgcgGAGCgCGAGcGUCucggcGACCu -3' miRNA: 3'- -GGGCUUGag-CUUGgGCUC-CAGc----UUGG- -5' |
|||||||
26361 | 5' | -53.2 | NC_005345.2 | + | 37739 | 0.66 | 0.827862 |
Target: 5'- gCCGGcuGgUCGGcguCgUCGAGGUCGAGCUg -3' miRNA: 3'- gGGCU--UgAGCUu--G-GGCUCCAGCUUGG- -5' |
|||||||
26361 | 5' | -53.2 | NC_005345.2 | + | 19873 | 0.66 | 0.827862 |
Target: 5'- -gCGAcCUCGAACCgCGcgccgauguugcGGG-CGAGCCg -3' miRNA: 3'- ggGCUuGAGCUUGG-GC------------UCCaGCUUGG- -5' |
|||||||
26361 | 5' | -53.2 | NC_005345.2 | + | 45542 | 0.66 | 0.827862 |
Target: 5'- gCgCGAGCagggCGAcagcGgCCGAGGUCGGggcggGCCg -3' miRNA: 3'- -GgGCUUGa---GCU----UgGGCUCCAGCU-----UGG- -5' |
|||||||
26361 | 5' | -53.2 | NC_005345.2 | + | 16616 | 0.66 | 0.827862 |
Target: 5'- -aCGGGCggccCGGACCCGcgcAGaUCGGGCCg -3' miRNA: 3'- ggGCUUGa---GCUUGGGC---UCcAGCUUGG- -5' |
|||||||
26361 | 5' | -53.2 | NC_005345.2 | + | 5392 | 0.66 | 0.827862 |
Target: 5'- -gCGAguccACUCaGGCCCGGcGGUCG-GCCg -3' miRNA: 3'- ggGCU----UGAGcUUGGGCU-CCAGCuUGG- -5' |
|||||||
26361 | 5' | -53.2 | NC_005345.2 | + | 17565 | 0.66 | 0.844623 |
Target: 5'- gCCGAGCa-GGGCCCGgcagagcugcaucAGGUCGuGCg -3' miRNA: 3'- gGGCUUGagCUUGGGC-------------UCCAGCuUGg -5' |
|||||||
26361 | 5' | -53.2 | NC_005345.2 | + | 46043 | 0.66 | 0.844623 |
Target: 5'- cCUCGguAugUCcgGGGCCCGAgGGUCGAucaggcgGCCg -3' miRNA: 3'- -GGGC--UugAG--CUUGGGCU-CCAGCU-------UGG- -5' |
|||||||
26361 | 5' | -53.2 | NC_005345.2 | + | 43497 | 0.66 | 0.845483 |
Target: 5'- gUCCGGGCccgccgggCGGugCCGAucgGGUCGGcgaucACCg -3' miRNA: 3'- -GGGCUUGa-------GCUugGGCU---CCAGCU-----UGG- -5' |
|||||||
26361 | 5' | -53.2 | NC_005345.2 | + | 40179 | 0.66 | 0.862218 |
Target: 5'- gCCCGucGACgUGAGCgaC-AGGUCGAGCCc -3' miRNA: 3'- -GGGC--UUGaGCUUGg-GcUCCAGCUUGG- -5' |
|||||||
26361 | 5' | -53.2 | NC_005345.2 | + | 22560 | 0.66 | 0.862218 |
Target: 5'- -gCGAGCgCGAGCaCCGAu-UCGAGCCc -3' miRNA: 3'- ggGCUUGaGCUUG-GGCUccAGCUUGG- -5' |
|||||||
26361 | 5' | -53.2 | NC_005345.2 | + | 3252 | 0.66 | 0.853966 |
Target: 5'- aCgCGGcGCUCGGugCCGAGGU---ACCc -3' miRNA: 3'- -GgGCU-UGAGCUugGGCUCCAgcuUGG- -5' |
|||||||
26361 | 5' | -53.2 | NC_005345.2 | + | 31766 | 0.66 | 0.853128 |
Target: 5'- -gCGAGugcguCUCGggUgCGGGGUCGAcgcacucggguucGCCg -3' miRNA: 3'- ggGCUU-----GAGCuuGgGCUCCAGCU-------------UGG- -5' |
|||||||
26361 | 5' | -53.2 | NC_005345.2 | + | 4625 | 0.66 | 0.845483 |
Target: 5'- gCCCGGguucGCUCGAuAUCCGGGccGUCGccuGCUg -3' miRNA: 3'- -GGGCU----UGAGCU-UGGGCUC--CAGCu--UGG- -5' |
|||||||
26361 | 5' | -53.2 | NC_005345.2 | + | 45785 | 0.66 | 0.845483 |
Target: 5'- gCCC-AGCUCGuagaaccacuGCgCGAGGUCGu-CCg -3' miRNA: 3'- -GGGcUUGAGCu---------UGgGCUCCAGCuuGG- -5' |
|||||||
26361 | 5' | -53.2 | NC_005345.2 | + | 24775 | 0.66 | 0.845483 |
Target: 5'- gCCGAGCUUGG--CCGc-GUUGAACCg -3' miRNA: 3'- gGGCUUGAGCUugGGCucCAGCUUGG- -5' |
|||||||
26361 | 5' | -53.2 | NC_005345.2 | + | 23432 | 0.66 | 0.845483 |
Target: 5'- gCCCGggUgUCGggUUCGccGUCcGGACCg -3' miRNA: 3'- -GGGCuuG-AGCuuGGGCucCAG-CUUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home