miRNA display CGI


Results 1 - 20 of 179 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26361 5' -53.2 NC_005345.2 + 219 0.67 0.809424
Target:  5'- gCCCGcAGCguUCGAacACCCucGGUCucggGAGCCa -3'
miRNA:   3'- -GGGC-UUG--AGCU--UGGGcuCCAG----CUUGG- -5'
26361 5' -53.2 NC_005345.2 + 546 0.66 0.853966
Target:  5'- -aCGAGCUCauccGGCgCGAGGUCGuACg -3'
miRNA:   3'- ggGCUUGAGc---UUGgGCUCCAGCuUGg -5'
26361 5' -53.2 NC_005345.2 + 966 0.71 0.566378
Target:  5'- cCCCGAGCagGAACCgCG-GGUCaauGAGCUc -3'
miRNA:   3'- -GGGCUUGagCUUGG-GCuCCAG---CUUGG- -5'
26361 5' -53.2 NC_005345.2 + 2566 0.68 0.738607
Target:  5'- gCCCGGucgacguGCUCGGGgCCGAGGcugacggCGAgggauACCu -3'
miRNA:   3'- -GGGCU-------UGAGCUUgGGCUCCa------GCU-----UGG- -5'
26361 5' -53.2 NC_005345.2 + 3181 0.68 0.770423
Target:  5'- gCCGggUcggCGAGCCCuGAGGgaugUCGuACCc -3'
miRNA:   3'- gGGCuuGa--GCUUGGG-CUCC----AGCuUGG- -5'
26361 5' -53.2 NC_005345.2 + 3252 0.66 0.853966
Target:  5'- aCgCGGcGCUCGGugCCGAGGU---ACCc -3'
miRNA:   3'- -GgGCU-UGAGCUugGGCUCCAgcuUGG- -5'
26361 5' -53.2 NC_005345.2 + 3454 0.7 0.653686
Target:  5'- cCCCGAGCUC--GCgCGGGcuGUCGGACa -3'
miRNA:   3'- -GGGCUUGAGcuUGgGCUC--CAGCUUGg -5'
26361 5' -53.2 NC_005345.2 + 4287 0.8 0.198556
Target:  5'- gCUCGGGCUCGGGCugcgguucgacccauCCGAGGUCGA-CCu -3'
miRNA:   3'- -GGGCUUGAGCUUG---------------GGCUCCAGCUuGG- -5'
26361 5' -53.2 NC_005345.2 + 4585 0.75 0.355394
Target:  5'- gUCCGGucguggagugcgACUCGGACCCGcucgcggcguaccuGGUCGAGCUg -3'
miRNA:   3'- -GGGCU------------UGAGCUUGGGCu-------------CCAGCUUGG- -5'
26361 5' -53.2 NC_005345.2 + 4625 0.66 0.845483
Target:  5'- gCCCGGguucGCUCGAuAUCCGGGccGUCGccuGCUg -3'
miRNA:   3'- -GGGCU----UGAGCU-UGGGCUC--CAGCu--UGG- -5'
26361 5' -53.2 NC_005345.2 + 4812 0.7 0.620828
Target:  5'- aCCGAauGCUCGGGCaCCGuGG-CGGcCCa -3'
miRNA:   3'- gGGCU--UGAGCUUG-GGCuCCaGCUuGG- -5'
26361 5' -53.2 NC_005345.2 + 5032 0.66 0.836779
Target:  5'- -aCGAACgUCGAcgagcgcaGCaUCGAGGgCGAGCCg -3'
miRNA:   3'- ggGCUUG-AGCU--------UG-GGCUCCaGCUUGG- -5'
26361 5' -53.2 NC_005345.2 + 5175 0.72 0.534273
Target:  5'- gCCGccCUCGAaggcucGCCCGAGGUCc-GCCc -3'
miRNA:   3'- gGGCuuGAGCU------UGGGCUCCAGcuUGG- -5'
26361 5' -53.2 NC_005345.2 + 5392 0.66 0.827862
Target:  5'- -gCGAguccACUCaGGCCCGGcGGUCG-GCCg -3'
miRNA:   3'- ggGCU----UGAGcUUGGGCU-CCAGCuUGG- -5'
26361 5' -53.2 NC_005345.2 + 5430 0.69 0.707911
Target:  5'- gCCGAGuucUUCGGcggcGCCCG-GGUCG-GCCg -3'
miRNA:   3'- gGGCUU---GAGCU----UGGGCuCCAGCuUGG- -5'
26361 5' -53.2 NC_005345.2 + 5646 0.7 0.620828
Target:  5'- aCCCGA--UCGGcaccGCCCGGcGGgccCGGACCg -3'
miRNA:   3'- -GGGCUugAGCU----UGGGCU-CCa--GCUUGG- -5'
26361 5' -53.2 NC_005345.2 + 5796 0.88 0.054055
Target:  5'- aCCCG-GC-CGAcCCCGAGGUCGAGCCg -3'
miRNA:   3'- -GGGCuUGaGCUuGGGCUCCAGCUUGG- -5'
26361 5' -53.2 NC_005345.2 + 6061 0.68 0.738607
Target:  5'- aCCGGauccaggcgagcaGCUCGGGCCaccccuugcaCGGGGUaucgaCGAGCCg -3'
miRNA:   3'- gGGCU-------------UGAGCUUGG----------GCUCCA-----GCUUGG- -5'
26361 5' -53.2 NC_005345.2 + 6476 0.77 0.268523
Target:  5'- gCCGAGCUguacggcggCGAGCCCGAGGcgUGGACg -3'
miRNA:   3'- gGGCUUGA---------GCUUGGGCUCCa-GCUUGg -5'
26361 5' -53.2 NC_005345.2 + 7136 0.74 0.432955
Target:  5'- aCCGGGCggggcaCGuGGCCCGggacGGGUCGGACCc -3'
miRNA:   3'- gGGCUUGa-----GC-UUGGGC----UCCAGCUUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.