Results 1 - 20 of 179 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26361 | 5' | -53.2 | NC_005345.2 | + | 17100 | 1.13 | 0.001057 |
Target: 5'- gCCCGAACUCGAACCCGAGGUCGAACCc -3' miRNA: 3'- -GGGCUUGAGCUUGGGCUCCAGCUUGG- -5' |
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26361 | 5' | -53.2 | NC_005345.2 | + | 17043 | 0.96 | 0.017242 |
Target: 5'- aCCCGcGCUgccCGAGCCCGAGGUCGAACCc -3' miRNA: 3'- -GGGCuUGA---GCUUGGGCUCCAGCUUGG- -5' |
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26361 | 5' | -53.2 | NC_005345.2 | + | 5796 | 0.88 | 0.054055 |
Target: 5'- aCCCG-GC-CGAcCCCGAGGUCGAGCCg -3' miRNA: 3'- -GGGCuUGaGCUuGGGCUCCAGCUUGG- -5' |
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26361 | 5' | -53.2 | NC_005345.2 | + | 17149 | 0.88 | 0.055482 |
Target: 5'- gUCGAGgUCGAACCCGAGGUCGAggucgaacccgagGCCg -3' miRNA: 3'- gGGCUUgAGCUUGGGCUCCAGCU-------------UGG- -5' |
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26361 | 5' | -53.2 | NC_005345.2 | + | 17076 | 0.84 | 0.110427 |
Target: 5'- gCCCGAgGC-CGAGCCCGAGGUCGAn-- -3' miRNA: 3'- -GGGCU-UGaGCUUGGGCUCCAGCUugg -5' |
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26361 | 5' | -53.2 | NC_005345.2 | + | 17357 | 0.84 | 0.110427 |
Target: 5'- aCCCGGACggCGAACCCGAGugcGUCGAcCCc -3' miRNA: 3'- -GGGCUUGa-GCUUGGGCUC---CAGCUuGG- -5' |
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26361 | 5' | -53.2 | NC_005345.2 | + | 22985 | 0.83 | 0.113569 |
Target: 5'- cCCgCGAACUCGGGCUCGGGGUCcucGCCg -3' miRNA: 3'- -GG-GCUUGAGCUUGGGCUCCAGcu-UGG- -5' |
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26361 | 5' | -53.2 | NC_005345.2 | + | 40898 | 0.83 | 0.126987 |
Target: 5'- cCCCGcGCUCGAACCCGgcgaguccugcGGGUCGucuACCc -3' miRNA: 3'- -GGGCuUGAGCUUGGGC-----------UCCAGCu--UGG- -5' |
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26361 | 5' | -53.2 | NC_005345.2 | + | 35543 | 0.81 | 0.167169 |
Target: 5'- gCgGGGCUCGGGCaCCGccggcGGGUCGAGCCa -3' miRNA: 3'- gGgCUUGAGCUUG-GGC-----UCCAGCUUGG- -5' |
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26361 | 5' | -53.2 | NC_005345.2 | + | 4287 | 0.8 | 0.198556 |
Target: 5'- gCUCGGGCUCGGGCugcgguucgacccauCCGAGGUCGA-CCu -3' miRNA: 3'- -GGGCUUGAGCUUG---------------GGCUCCAGCUuGG- -5' |
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26361 | 5' | -53.2 | NC_005345.2 | + | 39195 | 0.78 | 0.248708 |
Target: 5'- gCCCGAACcCGGGCCgCGGGuuggcgaccGUCGGGCCg -3' miRNA: 3'- -GGGCUUGaGCUUGG-GCUC---------CAGCUUGG- -5' |
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26361 | 5' | -53.2 | NC_005345.2 | + | 6476 | 0.77 | 0.268523 |
Target: 5'- gCCGAGCUguacggcggCGAGCCCGAGGcgUGGACg -3' miRNA: 3'- gGGCUUGA---------GCUUGGGCUCCa-GCUUGg -5' |
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26361 | 5' | -53.2 | NC_005345.2 | + | 44829 | 0.77 | 0.268523 |
Target: 5'- gCCGAugUCGAgacgcaggucgACCuCGgauGGGUCGAACCg -3' miRNA: 3'- gGGCUugAGCU-----------UGG-GC---UCCAGCUUGG- -5' |
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26361 | 5' | -53.2 | NC_005345.2 | + | 41105 | 0.77 | 0.282429 |
Target: 5'- aUCUGcAGCUCGugcagcuGCgCGAGGUCGAGCCc -3' miRNA: 3'- -GGGC-UUGAGCu------UGgGCUCCAGCUUGG- -5' |
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26361 | 5' | -53.2 | NC_005345.2 | + | 18043 | 0.77 | 0.289593 |
Target: 5'- aCCCGugcacCUCGAACCCGAaccCGAGCCg -3' miRNA: 3'- -GGGCuu---GAGCUUGGGCUccaGCUUGG- -5' |
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26361 | 5' | -53.2 | NC_005345.2 | + | 15459 | 0.77 | 0.296899 |
Target: 5'- cCCCGAGC-CGcuucGCCUGcuucGGGUCGAGCCc -3' miRNA: 3'- -GGGCUUGaGCu---UGGGC----UCCAGCUUGG- -5' |
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26361 | 5' | -53.2 | NC_005345.2 | + | 38505 | 0.76 | 0.311938 |
Target: 5'- aCCCGGGCgaccauggCGAGcCCCGGGGU-GGGCCc -3' miRNA: 3'- -GGGCUUGa-------GCUU-GGGCUCCAgCUUGG- -5' |
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26361 | 5' | -53.2 | NC_005345.2 | + | 39769 | 0.76 | 0.319671 |
Target: 5'- gCUGAACagCGGcuGCCCGuaguGGUCGAGCCc -3' miRNA: 3'- gGGCUUGa-GCU--UGGGCu---CCAGCUUGG- -5' |
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26361 | 5' | -53.2 | NC_005345.2 | + | 22163 | 0.76 | 0.334759 |
Target: 5'- uCCCGcaGGCUCGAcagcccgucgaacGCCgCGAGGaCGAACCc -3' miRNA: 3'- -GGGC--UUGAGCU-------------UGG-GCUCCaGCUUGG- -5' |
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26361 | 5' | -53.2 | NC_005345.2 | + | 17409 | 0.76 | 0.335568 |
Target: 5'- cCCCGcACcCGcACCCGAGGUgcaccCGAACCc -3' miRNA: 3'- -GGGCuUGaGCuUGGGCUCCA-----GCUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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