miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26361 5' -53.2 NC_005345.2 + 17100 1.13 0.001057
Target:  5'- gCCCGAACUCGAACCCGAGGUCGAACCc -3'
miRNA:   3'- -GGGCUUGAGCUUGGGCUCCAGCUUGG- -5'
26361 5' -53.2 NC_005345.2 + 36551 0.74 0.414043
Target:  5'- cCCCGAGCUCGugcGCuUCGGGGgcggCGAcACCg -3'
miRNA:   3'- -GGGCUUGAGCu--UG-GGCUCCa---GCU-UGG- -5'
26361 5' -53.2 NC_005345.2 + 7136 0.74 0.432955
Target:  5'- aCCGGGCggggcaCGuGGCCCGggacGGGUCGGACCc -3'
miRNA:   3'- gGGCUUGa-----GC-UUGGGC----UCCAGCUUGG- -5'
26361 5' -53.2 NC_005345.2 + 46573 0.66 0.862218
Target:  5'- gCCGucagcCUCGGcCCCGAGcacGUCGA-CCg -3'
miRNA:   3'- gGGCuu---GAGCUuGGGCUC---CAGCUuGG- -5'
26361 5' -53.2 NC_005345.2 + 17076 0.84 0.110427
Target:  5'- gCCCGAgGC-CGAGCCCGAGGUCGAn-- -3'
miRNA:   3'- -GGGCU-UGaGCUUGGGCUCCAGCUugg -5'
26361 5' -53.2 NC_005345.2 + 17357 0.84 0.110427
Target:  5'- aCCCGGACggCGAACCCGAGugcGUCGAcCCc -3'
miRNA:   3'- -GGGCUUGa-GCUUGGGCUC---CAGCUuGG- -5'
26361 5' -53.2 NC_005345.2 + 6476 0.77 0.268523
Target:  5'- gCCGAGCUguacggcggCGAGCCCGAGGcgUGGACg -3'
miRNA:   3'- gGGCUUGA---------GCUUGGGCUCCa-GCUUGg -5'
26361 5' -53.2 NC_005345.2 + 44829 0.77 0.268523
Target:  5'- gCCGAugUCGAgacgcaggucgACCuCGgauGGGUCGAACCg -3'
miRNA:   3'- gGGCUugAGCU-----------UGG-GC---UCCAGCUUGG- -5'
26361 5' -53.2 NC_005345.2 + 17409 0.76 0.335568
Target:  5'- cCCCGcACcCGcACCCGAGGUgcaccCGAACCc -3'
miRNA:   3'- -GGGCuUGaGCuUGGGCUCCA-----GCUUGG- -5'
26361 5' -53.2 NC_005345.2 + 25714 0.74 0.41125
Target:  5'- gUCCGGACggCGAACCCGAcacccgggcgucgcGGUgguggcaggCGAACCg -3'
miRNA:   3'- -GGGCUUGa-GCUUGGGCU--------------CCA---------GCUUGG- -5'
26361 5' -53.2 NC_005345.2 + 7525 0.75 0.377788
Target:  5'- aCCCGGGgaUCGAGaucCCCGAGGgugCGAcgGCCg -3'
miRNA:   3'- -GGGCUUg-AGCUU---GGGCUCCa--GCU--UGG- -5'
26361 5' -53.2 NC_005345.2 + 38505 0.76 0.311938
Target:  5'- aCCCGGGCgaccauggCGAGcCCCGGGGU-GGGCCc -3'
miRNA:   3'- -GGGCUUGa-------GCUU-GGGCUCCAgCUUGG- -5'
26361 5' -53.2 NC_005345.2 + 17043 0.96 0.017242
Target:  5'- aCCCGcGCUgccCGAGCCCGAGGUCGAACCc -3'
miRNA:   3'- -GGGCuUGA---GCUUGGGCUCCAGCUUGG- -5'
26361 5' -53.2 NC_005345.2 + 31223 0.75 0.377788
Target:  5'- uUCCGGAC-CGAcaucaCCGAGGagUCGAACCg -3'
miRNA:   3'- -GGGCUUGaGCUug---GGCUCC--AGCUUGG- -5'
26361 5' -53.2 NC_005345.2 + 5796 0.88 0.054055
Target:  5'- aCCCG-GC-CGAcCCCGAGGUCGAGCCg -3'
miRNA:   3'- -GGGCuUGaGCUuGGGCUCCAGCUUGG- -5'
26361 5' -53.2 NC_005345.2 + 18043 0.77 0.289593
Target:  5'- aCCCGugcacCUCGAACCCGAaccCGAGCCg -3'
miRNA:   3'- -GGGCuu---GAGCUUGGGCUccaGCUUGG- -5'
26361 5' -53.2 NC_005345.2 + 32665 0.74 0.395647
Target:  5'- cCUCGAcGCcgUCGAGgCCGAGGUCGA-CCu -3'
miRNA:   3'- -GGGCU-UG--AGCUUgGGCUCCAGCUuGG- -5'
26361 5' -53.2 NC_005345.2 + 44347 0.74 0.423436
Target:  5'- gCCCGAGCauUCGGuuccccACCCGcGG-CGAGCCc -3'
miRNA:   3'- -GGGCUUG--AGCU------UGGGCuCCaGCUUGG- -5'
26361 5' -53.2 NC_005345.2 + 17149 0.88 0.055482
Target:  5'- gUCGAGgUCGAACCCGAGGUCGAggucgaacccgagGCCg -3'
miRNA:   3'- gGGCUUgAGCUUGGGCUCCAGCU-------------UGG- -5'
26361 5' -53.2 NC_005345.2 + 40898 0.83 0.126987
Target:  5'- cCCCGcGCUCGAACCCGgcgaguccugcGGGUCGucuACCc -3'
miRNA:   3'- -GGGCuUGAGCUUGGGC-----------UCCAGCu--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.