miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26366 3' -61.7 NC_005345.2 + 4341 0.66 0.357543
Target:  5'- cGGCCGAgccgggguccugccUCgggcggGCGGGCCgcuCGGUgGGGg -3'
miRNA:   3'- aCCGGCU--------------AGa-----CGCCCGG---GCCAaCCUg -5'
26366 3' -61.7 NC_005345.2 + 9443 0.66 0.343699
Target:  5'- gUGGcCCGAgcUCgucccggGCGGuGUCCGGUgaugcgGGGCu -3'
miRNA:   3'- -ACC-GGCU--AGa------CGCC-CGGGCCAa-----CCUG- -5'
26366 3' -61.7 NC_005345.2 + 37668 0.66 0.343699
Target:  5'- gGGCCGc-CUGCGcGGCCCugaugucgucGGccgUGGGCc -3'
miRNA:   3'- aCCGGCuaGACGC-CCGGG----------CCa--ACCUG- -5'
26366 3' -61.7 NC_005345.2 + 32901 0.66 0.335737
Target:  5'- aGGCUGGgggcgCUGCGGGCC-GGUcgaucagGGGu -3'
miRNA:   3'- aCCGGCUa----GACGCCCGGgCCAa------CCUg -5'
26366 3' -61.7 NC_005345.2 + 48341 0.66 0.335737
Target:  5'- cGGCCcccgggcgagcaGGUgUaaGCGGGCCCGGUcGG-Ca -3'
miRNA:   3'- aCCGG------------CUAgA--CGCCCGGGCCAaCCuG- -5'
26366 3' -61.7 NC_005345.2 + 6321 0.67 0.32328
Target:  5'- cGGCCGAaguacugcacgagcgUCUcguacggcacgaGCGGcGCCgGGUUGGcCg -3'
miRNA:   3'- aCCGGCU---------------AGA------------CGCC-CGGgCCAACCuG- -5'
26366 3' -61.7 NC_005345.2 + 43490 0.67 0.320221
Target:  5'- cGGCuCGGUC--CGGGCCCGcc-GGGCg -3'
miRNA:   3'- aCCG-GCUAGacGCCCGGGCcaaCCUG- -5'
26366 3' -61.7 NC_005345.2 + 35745 0.67 0.320221
Target:  5'- cGGCCGAaCgagcgGCGGcauCCCGGggcaGGACu -3'
miRNA:   3'- aCCGGCUaGa----CGCCc--GGGCCaa--CCUG- -5'
26366 3' -61.7 NC_005345.2 + 35771 0.67 0.312666
Target:  5'- gGGCgGggCgGUGGGUUCGGUggcucGGACg -3'
miRNA:   3'- aCCGgCuaGaCGCCCGGGCCAa----CCUG- -5'
26366 3' -61.7 NC_005345.2 + 8410 0.67 0.312666
Target:  5'- -uGCCGGUCgacgGGGCgCGGcUGGACg -3'
miRNA:   3'- acCGGCUAGacg-CCCGgGCCaACCUG- -5'
26366 3' -61.7 NC_005345.2 + 3410 0.67 0.312666
Target:  5'- gGGCUGAgagaggCgGCGGGCgCGGcggcGGGCg -3'
miRNA:   3'- aCCGGCUa-----GaCGCCCGgGCCaa--CCUG- -5'
26366 3' -61.7 NC_005345.2 + 16057 0.67 0.290818
Target:  5'- cGGCUgcgucaGAUC-GCGGGgUCGGUgugaUGGACa -3'
miRNA:   3'- aCCGG------CUAGaCGCCCgGGCCA----ACCUG- -5'
26366 3' -61.7 NC_005345.2 + 39636 0.67 0.29011
Target:  5'- gGGUCGGUCUGCgcgcacaGGGCCCGc---GACu -3'
miRNA:   3'- aCCGGCUAGACG-------CCCGGGCcaacCUG- -5'
26366 3' -61.7 NC_005345.2 + 9596 0.67 0.283805
Target:  5'- cGGCCGGgaccggCcGCGGGgCCGGUgcacGACc -3'
miRNA:   3'- aCCGGCUa-----GaCGCCCgGGCCAac--CUG- -5'
26366 3' -61.7 NC_005345.2 + 38254 0.68 0.276247
Target:  5'- aGGCgUGAUCgaugacgUGCGGGUgCGGgcacgGGACg -3'
miRNA:   3'- aCCG-GCUAG-------ACGCCCGgGCCaa---CCUG- -5'
26366 3' -61.7 NC_005345.2 + 24649 0.68 0.257093
Target:  5'- gUGGUCGAccaggaUCccGCGGGCCCGGgaccGGcCg -3'
miRNA:   3'- -ACCGGCU------AGa-CGCCCGGGCCaa--CCuG- -5'
26366 3' -61.7 NC_005345.2 + 15689 0.68 0.248865
Target:  5'- cGGCCGAUCUGCcgcugcagguccucGGcgaaucCCCGGgcgcucgGGACg -3'
miRNA:   3'- aCCGGCUAGACG--------------CCc-----GGGCCaa-----CCUG- -5'
26366 3' -61.7 NC_005345.2 + 3971 0.69 0.238435
Target:  5'- cGGCauacuCGG-CUGCGacgucaGGCCCGGUcGGACg -3'
miRNA:   3'- aCCG-----GCUaGACGC------CCGGGCCAaCCUG- -5'
26366 3' -61.7 NC_005345.2 + 36151 0.69 0.238435
Target:  5'- gGGCCGccgacAUCgGCGGGUCCGGcgugcagcgUUGGuCg -3'
miRNA:   3'- aCCGGC-----UAGaCGCCCGGGCC---------AACCuG- -5'
26366 3' -61.7 NC_005345.2 + 1475 0.69 0.232473
Target:  5'- cGGCCGugaUGCGgagcGGCCCGcGgUGGACc -3'
miRNA:   3'- aCCGGCuagACGC----CCGGGC-CaACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.