miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26374 5' -54.4 NC_005345.2 + 22264 0.66 0.759115
Target:  5'- uGCCGUgGGCGCagcggaucgucgagGCGgccggggcgACGUGGGuCGAGGu -3'
miRNA:   3'- -CGGUA-CCGCG--------------CGCa--------UGCACUU-GCUCU- -5'
26374 5' -54.4 NC_005345.2 + 19582 0.66 0.751848
Target:  5'- aCCAUcGGCGCaGUGccggACGgggcGAGCGGGAa -3'
miRNA:   3'- cGGUA-CCGCG-CGCa---UGCa---CUUGCUCU- -5'
26374 5' -54.4 NC_005345.2 + 32112 0.66 0.741363
Target:  5'- gGCUcgGGCaGCGCGggUGCGaGGGCGAu- -3'
miRNA:   3'- -CGGuaCCG-CGCGC--AUGCaCUUGCUcu -5'
26374 5' -54.4 NC_005345.2 + 31745 0.66 0.741363
Target:  5'- cCUcgGGUGCGgGUGCGggguGCGAGu -3'
miRNA:   3'- cGGuaCCGCGCgCAUGCacu-UGCUCu -5'
26374 5' -54.4 NC_005345.2 + 14791 0.66 0.730764
Target:  5'- cGCCccGGUGCGCuucgACGUcGAGCGGcGGg -3'
miRNA:   3'- -CGGuaCCGCGCGca--UGCA-CUUGCU-CU- -5'
26374 5' -54.4 NC_005345.2 + 20422 0.66 0.730764
Target:  5'- cGCCGUGG-GCGCcGUAccugccccCGUGGAaGAGGu -3'
miRNA:   3'- -CGGUACCgCGCG-CAU--------GCACUUgCUCU- -5'
26374 5' -54.4 NC_005345.2 + 5604 0.67 0.70928
Target:  5'- uGCCGUGGgGCGCcGggcuCGUGGcCGAc- -3'
miRNA:   3'- -CGGUACCgCGCG-Cau--GCACUuGCUcu -5'
26374 5' -54.4 NC_005345.2 + 39352 0.67 0.698417
Target:  5'- cGgCGUGGcCGUGCGcUACGaGAuCGAGAu -3'
miRNA:   3'- -CgGUACC-GCGCGC-AUGCaCUuGCUCU- -5'
26374 5' -54.4 NC_005345.2 + 33188 0.67 0.676505
Target:  5'- cGCCAacUGGCaGCGCGc----GAACGAGGg -3'
miRNA:   3'- -CGGU--ACCG-CGCGCaugcaCUUGCUCU- -5'
26374 5' -54.4 NC_005345.2 + 30741 0.67 0.665481
Target:  5'- gGCCGUGaGCGCGaGgccgGCGaGggUGAGGg -3'
miRNA:   3'- -CGGUAC-CGCGCgCa---UGCaCuuGCUCU- -5'
26374 5' -54.4 NC_005345.2 + 29298 0.67 0.66548
Target:  5'- cGCCcgaGGCaGCGCGcuCGUGAACGcGAc -3'
miRNA:   3'- -CGGua-CCG-CGCGCauGCACUUGCuCU- -5'
26374 5' -54.4 NC_005345.2 + 8686 0.67 0.66548
Target:  5'- gGCgGUGGC-CGUG-ACGUGGGCGGc- -3'
miRNA:   3'- -CGgUACCGcGCGCaUGCACUUGCUcu -5'
26374 5' -54.4 NC_005345.2 + 30306 0.68 0.654423
Target:  5'- aGCCcgGUGGCG-GCGUACGcaacGGuCGAGGa -3'
miRNA:   3'- -CGG--UACCGCgCGCAUGCa---CUuGCUCU- -5'
26374 5' -54.4 NC_005345.2 + 16562 0.68 0.632258
Target:  5'- gGUCAUGgGCGCGgGUcuccuucgaGCGUGcGCGGGu -3'
miRNA:   3'- -CGGUAC-CGCGCgCA---------UGCACuUGCUCu -5'
26374 5' -54.4 NC_005345.2 + 31264 0.68 0.632258
Target:  5'- aCUcgGGUGCGCGggUGCGgGGGCGGGu -3'
miRNA:   3'- cGGuaCCGCGCGC--AUGCaCUUGCUCu -5'
26374 5' -54.4 NC_005345.2 + 4235 0.68 0.632257
Target:  5'- aGCCgAUGGuCGcCGC-UGCG-GAGCGGGAc -3'
miRNA:   3'- -CGG-UACC-GC-GCGcAUGCaCUUGCUCU- -5'
26374 5' -54.4 NC_005345.2 + 10596 0.68 0.610091
Target:  5'- uGCCgGUGG-GCGCGUACGc---CGAGAc -3'
miRNA:   3'- -CGG-UACCgCGCGCAUGCacuuGCUCU- -5'
26374 5' -54.4 NC_005345.2 + 28115 0.68 0.599031
Target:  5'- cGCC--GGCGCGCGUGCcgagGAACGc-- -3'
miRNA:   3'- -CGGuaCCGCGCGCAUGca--CUUGCucu -5'
26374 5' -54.4 NC_005345.2 + 39910 0.69 0.566062
Target:  5'- aCCGUGGuCGCgGCGUACGacuUGAGCGu-- -3'
miRNA:   3'- cGGUACC-GCG-CGCAUGC---ACUUGCucu -5'
26374 5' -54.4 NC_005345.2 + 6826 0.7 0.527158
Target:  5'- cGCCAUGGCGgGCGggaucgacaugguccUcGCGgcgacGGACGGGAa -3'
miRNA:   3'- -CGGUACCGCgCGC---------------A-UGCa----CUUGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.