miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26394 3' -55 NC_005345.2 + 2481 0.67 0.631772
Target:  5'- -cGCgCGAgCGAGCUcgauguacaCGCCGCUGCGc -3'
miRNA:   3'- caCG-GCUgGCUCGAa--------GUGGUGAUGCu -5'
26394 3' -55 NC_005345.2 + 14927 0.66 0.665139
Target:  5'- cGUGCCGccCCGGGCga-ACUGCUGCc- -3'
miRNA:   3'- -CACGGCu-GGCUCGaagUGGUGAUGcu -5'
26394 3' -55 NC_005345.2 + 7259 0.66 0.665139
Target:  5'- -gGCCGaACCGAcaaGCgUCGCCGCccgcGCGAu -3'
miRNA:   3'- caCGGC-UGGCU---CGaAGUGGUGa---UGCU- -5'
26394 3' -55 NC_005345.2 + 5666 0.66 0.665139
Target:  5'- -cGgCGAUCGAGg-UCACCugUGCGu -3'
miRNA:   3'- caCgGCUGGCUCgaAGUGGugAUGCu -5'
26394 3' -55 NC_005345.2 + 4781 0.67 0.654034
Target:  5'- cGUGCCuuuCCGGGC-UCGCCGCgggugGgGAa -3'
miRNA:   3'- -CACGGcu-GGCUCGaAGUGGUGa----UgCU- -5'
26394 3' -55 NC_005345.2 + 792 0.67 0.654034
Target:  5'- aUGCCGACCGGGCc-CGCUuacacCUGCu- -3'
miRNA:   3'- cACGGCUGGCUCGaaGUGGu----GAUGcu -5'
26394 3' -55 NC_005345.2 + 32189 0.67 0.654034
Target:  5'- -aGCCGGCCGAGgU--GCCGCagGCGu -3'
miRNA:   3'- caCGGCUGGCUCgAagUGGUGa-UGCu -5'
26394 3' -55 NC_005345.2 + 16086 0.67 0.642908
Target:  5'- cUGCCGcacguacacGCCGAGCUcgCGCCAUgugagcaGCGGc -3'
miRNA:   3'- cACGGC---------UGGCUCGAa-GUGGUGa------UGCU- -5'
26394 3' -55 NC_005345.2 + 13223 0.67 0.642908
Target:  5'- -cGCCGACCuu-CUUCGCCGCgucccCGAg -3'
miRNA:   3'- caCGGCUGGcucGAAGUGGUGau---GCU- -5'
26394 3' -55 NC_005345.2 + 32818 0.66 0.665139
Target:  5'- -cGCCGA-CGAGCuUUCGCUGC-GCGGg -3'
miRNA:   3'- caCGGCUgGCUCG-AAGUGGUGaUGCU- -5'
26394 3' -55 NC_005345.2 + 4414 0.66 0.676213
Target:  5'- -aGUCaGugCGAGCUgUGCCACgggGCGAg -3'
miRNA:   3'- caCGG-CugGCUCGAaGUGGUGa--UGCU- -5'
26394 3' -55 NC_005345.2 + 23356 0.66 0.687243
Target:  5'- -gGCCGACUGuGCcaucgccaugCGCCAC-ACGAg -3'
miRNA:   3'- caCGGCUGGCuCGaa--------GUGGUGaUGCU- -5'
26394 3' -55 NC_005345.2 + 17253 0.65 0.719965
Target:  5'- -cGuCCGACCGGGCggcaggCGCCGCg---- -3'
miRNA:   3'- caC-GGCUGGCUCGaa----GUGGUGaugcu -5'
26394 3' -55 NC_005345.2 + 34779 0.65 0.719965
Target:  5'- -gGCCGgucGCCGAGCUgCGCCGggucGCGGu -3'
miRNA:   3'- caCGGC---UGGCUCGAaGUGGUga--UGCU- -5'
26394 3' -55 NC_005345.2 + 13261 0.66 0.709131
Target:  5'- aUGCCG-CCGucGGCga-ACCGCUGCa- -3'
miRNA:   3'- cACGGCuGGC--UCGaagUGGUGAUGcu -5'
26394 3' -55 NC_005345.2 + 19392 0.66 0.709131
Target:  5'- cGUGCCGagcagcgucgcGCCGAGCUcgguCgGCUGCGc -3'
miRNA:   3'- -CACGGC-----------UGGCUCGAagu-GgUGAUGCu -5'
26394 3' -55 NC_005345.2 + 38275 0.66 0.709131
Target:  5'- gGUGCgGGCaCGGGacgCGCCGCgUGCGGc -3'
miRNA:   3'- -CACGgCUG-GCUCgaaGUGGUG-AUGCU- -5'
26394 3' -55 NC_005345.2 + 25081 0.66 0.709131
Target:  5'- -gGCCGGCCGAucgGC-UCGCCG-UACGc -3'
miRNA:   3'- caCGGCUGGCU---CGaAGUGGUgAUGCu -5'
26394 3' -55 NC_005345.2 + 43713 0.66 0.69822
Target:  5'- -gGCCGAcCCGGGCgcCGCCgaagaACUcgGCGAg -3'
miRNA:   3'- caCGGCU-GGCUCGaaGUGG-----UGA--UGCU- -5'
26394 3' -55 NC_005345.2 + 34239 0.66 0.69822
Target:  5'- -cGCCGcGCCGcggcccGCUUCGcCCGCUGCu- -3'
miRNA:   3'- caCGGC-UGGCu-----CGAAGU-GGUGAUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.