miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26400 5' -54.3 NC_005345.2 + 8943 0.66 0.763996
Target:  5'- cGUGgGCGGgcuGCGGGugcucGGGCUCGAccuGUCGCu -3'
miRNA:   3'- -CGCgCGCU---UGCUC-----CCUGAGUU---CAGUG- -5'
26400 5' -54.3 NC_005345.2 + 43440 0.66 0.75362
Target:  5'- cGCuCGCuguuguGGCGAGGGACggcggCGAGUuCGCg -3'
miRNA:   3'- -CGcGCGc-----UUGCUCCCUGa----GUUCA-GUG- -5'
26400 5' -54.3 NC_005345.2 + 29281 0.66 0.743117
Target:  5'- gGCGCGCGGuuCGAGGucGCcCGAGgcagCGCg -3'
miRNA:   3'- -CGCGCGCUu-GCUCCc-UGaGUUCa---GUG- -5'
26400 5' -54.3 NC_005345.2 + 39592 0.66 0.743117
Target:  5'- gGUGCGCGGggacuACGAGGGgcaGCUCGGcGUguggacccgCACg -3'
miRNA:   3'- -CGCGCGCU-----UGCUCCC---UGAGUU-CA---------GUG- -5'
26400 5' -54.3 NC_005345.2 + 5259 0.66 0.743117
Target:  5'- gGCGUGaCGGGCGgcagGGcGGGCUCGggGGUCGg -3'
miRNA:   3'- -CGCGC-GCUUGC----UC-CCUGAGU--UCAGUg -5'
26400 5' -54.3 NC_005345.2 + 1175 0.66 0.743117
Target:  5'- cGUGCGCGGcgcacACGGGcGGCUCGgcAGUC-Cg -3'
miRNA:   3'- -CGCGCGCU-----UGCUCcCUGAGU--UCAGuG- -5'
26400 5' -54.3 NC_005345.2 + 21387 0.66 0.721778
Target:  5'- gGUGCGCGggUGAcGGGGCa-GAGU-GCg -3'
miRNA:   3'- -CGCGCGCuuGCU-CCCUGagUUCAgUG- -5'
26400 5' -54.3 NC_005345.2 + 34922 0.67 0.710966
Target:  5'- gGCGUGCGcagggcggcGGCGAGGGccuGCUCGgcGGaCACc -3'
miRNA:   3'- -CGCGCGC---------UUGCUCCC---UGAGU--UCaGUG- -5'
26400 5' -54.3 NC_005345.2 + 43975 0.67 0.710966
Target:  5'- uCGgGCGAGCcuucGAGGGcgGCgaCGAGUCGCu -3'
miRNA:   3'- cGCgCGCUUG----CUCCC--UGa-GUUCAGUG- -5'
26400 5' -54.3 NC_005345.2 + 32810 0.67 0.710966
Target:  5'- -gGCGCGuuccGCGAGGcACUCGGGaaGCa -3'
miRNA:   3'- cgCGCGCu---UGCUCCcUGAGUUCagUG- -5'
26400 5' -54.3 NC_005345.2 + 23298 0.67 0.710966
Target:  5'- gGCGC-CGAAgccCGAGGGGCggAAGgCGCg -3'
miRNA:   3'- -CGCGcGCUU---GCUCCCUGagUUCaGUG- -5'
26400 5' -54.3 NC_005345.2 + 45704 0.67 0.689117
Target:  5'- cCGCGCGAGCucGGGGCcCGcaUCGCc -3'
miRNA:   3'- cGCGCGCUUGcuCCCUGaGUucAGUG- -5'
26400 5' -54.3 NC_005345.2 + 16422 0.67 0.689117
Target:  5'- aGCGgGCccacgcCGAGGGACUCGgcuGGuUCGCc -3'
miRNA:   3'- -CGCgCGcuu---GCUCCCUGAGU---UC-AGUG- -5'
26400 5' -54.3 NC_005345.2 + 32534 0.67 0.678102
Target:  5'- gGCGUGCaugccGAcgcCGAGGGGgUCGGGcCACg -3'
miRNA:   3'- -CGCGCG-----CUu--GCUCCCUgAGUUCaGUG- -5'
26400 5' -54.3 NC_005345.2 + 21855 0.67 0.65595
Target:  5'- uGCGUGCGGGCGAGcug--CAGGUCGg -3'
miRNA:   3'- -CGCGCGCUUGCUCccugaGUUCAGUg -5'
26400 5' -54.3 NC_005345.2 + 13777 0.68 0.644835
Target:  5'- aGCGCGcCGAACGcGGG-CUUGAGgaCGCu -3'
miRNA:   3'- -CGCGC-GCUUGCuCCCuGAGUUCa-GUG- -5'
26400 5' -54.3 NC_005345.2 + 7600 0.68 0.633709
Target:  5'- aGCGCGCGcACGAcgucgucGAC-CAGGUCGCc -3'
miRNA:   3'- -CGCGCGCuUGCUcc-----CUGaGUUCAGUG- -5'
26400 5' -54.3 NC_005345.2 + 15379 0.68 0.610349
Target:  5'- cUGCGCGAGCGuccgcAGGGAgUCGuugaccuGGUCGa -3'
miRNA:   3'- cGCGCGCUUGC-----UCCCUgAGU-------UCAGUg -5'
26400 5' -54.3 NC_005345.2 + 26557 0.68 0.604797
Target:  5'- gGUGCGCGAgcACaucgcgucguucaguGAGGGGCUCGAaUCGg -3'
miRNA:   3'- -CGCGCGCU--UG---------------CUCCCUGAGUUcAGUg -5'
26400 5' -54.3 NC_005345.2 + 31269 0.68 0.600359
Target:  5'- gGUGCGCGggUGcGGGGGCg--GGUgCGCg -3'
miRNA:   3'- -CGCGCGCuuGC-UCCCUGaguUCA-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.