miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2641 5' -56.6 NC_001491.2 + 27137 0.66 0.866362
Target:  5'- -gCUGcCU-CCGCcgACACGGCGCGcacgaccgcGGCa -3'
miRNA:   3'- uaGAUuGAuGGCG--UGUGCCGCGC---------CCG- -5'
2641 5' -56.6 NC_001491.2 + 72537 0.66 0.850955
Target:  5'- -gCUAACUgGCCuaGCGCuaAUGGCGCgugGGGCu -3'
miRNA:   3'- uaGAUUGA-UGG--CGUG--UGCCGCG---CCCG- -5'
2641 5' -56.6 NC_001491.2 + 53869 0.66 0.850163
Target:  5'- uUCggGACUcuccaggGCCGCugGaGGCGCaGGCa -3'
miRNA:   3'- uAGa-UUGA-------UGGCGugUgCCGCGcCCG- -5'
2641 5' -56.6 NC_001491.2 + 65090 0.67 0.842949
Target:  5'- uUCUAugUgcgauGCCGCAguaACGGCGCucuGGGa -3'
miRNA:   3'- uAGAUugA-----UGGCGUg--UGCCGCG---CCCg -5'
2641 5' -56.6 NC_001491.2 + 105111 0.67 0.832256
Target:  5'- ---gGGCcGCCGCAgauuuggccggggcCGCGGCGgGGGUc -3'
miRNA:   3'- uagaUUGaUGGCGU--------------GUGCCGCgCCCG- -5'
2641 5' -56.6 NC_001491.2 + 26935 0.67 0.826369
Target:  5'- ----uGCgGCCGCugAcuCGGCGUGGGUc -3'
miRNA:   3'- uagauUGaUGGCGugU--GCCGCGCCCG- -5'
2641 5' -56.6 NC_001491.2 + 115306 0.67 0.821254
Target:  5'- cGUCUAGCgcggcgcgUGCCGCugagauguaguucauAUACgGGCGCGGuGCc -3'
miRNA:   3'- -UAGAUUG--------AUGGCG---------------UGUG-CCGCGCC-CG- -5'
2641 5' -56.6 NC_001491.2 + 2983 0.67 0.816944
Target:  5'- uUCUGcggcuggGCUGCUGCcCcCGGgaGCGGGCg -3'
miRNA:   3'- uAGAU-------UGAUGGCGuGuGCCg-CGCCCG- -5'
2641 5' -56.6 NC_001491.2 + 11460 0.68 0.791148
Target:  5'- uUCUgcaGAC-ACgUGCGCGCGGCuGCGGGg -3'
miRNA:   3'- uAGA---UUGaUG-GCGUGUGCCG-CGCCCg -5'
2641 5' -56.6 NC_001491.2 + 84592 0.68 0.791148
Target:  5'- -------aGCCGCAC-CGGCG-GGGCu -3'
miRNA:   3'- uagauugaUGGCGUGuGCCGCgCCCG- -5'
2641 5' -56.6 NC_001491.2 + 135297 0.68 0.791148
Target:  5'- -cCUGGCagcACUGCGCugGGgGaGGGCg -3'
miRNA:   3'- uaGAUUGa--UGGCGUGugCCgCgCCCG- -5'
2641 5' -56.6 NC_001491.2 + 83286 0.68 0.781962
Target:  5'- -aUUAACUGCCcccagcuggguGCGguuuuagcCACGGCuGCGGGCc -3'
miRNA:   3'- uaGAUUGAUGG-----------CGU--------GUGCCG-CGCCCG- -5'
2641 5' -56.6 NC_001491.2 + 10051 0.68 0.781962
Target:  5'- gGUCUcGCUGCCGCGCuCcGUGgGGGa -3'
miRNA:   3'- -UAGAuUGAUGGCGUGuGcCGCgCCCg -5'
2641 5' -56.6 NC_001491.2 + 8893 0.68 0.781962
Target:  5'- uUCccGCUGCgCGC-CACGcUGCGGGCa -3'
miRNA:   3'- uAGauUGAUG-GCGuGUGCcGCGCCCG- -5'
2641 5' -56.6 NC_001491.2 + 52859 0.68 0.772641
Target:  5'- ----cACaGCCGCggucuGCGCGGCGCuGGCa -3'
miRNA:   3'- uagauUGaUGGCG-----UGUGCCGCGcCCG- -5'
2641 5' -56.6 NC_001491.2 + 33513 0.68 0.75363
Target:  5'- ---aGGCUGCCGCGgcCGCGGcCGCuccggggaccaGGGCg -3'
miRNA:   3'- uagaUUGAUGGCGU--GUGCC-GCG-----------CCCG- -5'
2641 5' -56.6 NC_001491.2 + 21875 0.68 0.750739
Target:  5'- uGUCgaugGGCUcgggaaagcaccccACgGCACGCgGGUGUGGGCu -3'
miRNA:   3'- -UAGa---UUGA--------------UGgCGUGUG-CCGCGCCCG- -5'
2641 5' -56.6 NC_001491.2 + 136725 0.69 0.724331
Target:  5'- gGUCcAGCUGCCGCAUACccauCGgGGGUa -3'
miRNA:   3'- -UAGaUUGAUGGCGUGUGcc--GCgCCCG- -5'
2641 5' -56.6 NC_001491.2 + 85479 0.69 0.724331
Target:  5'- uAUCUGgauuuccgcgGCUggggaaACCGCGgccuCGGCGUGGGCa -3'
miRNA:   3'- -UAGAU----------UGA------UGGCGUgu--GCCGCGCCCG- -5'
2641 5' -56.6 NC_001491.2 + 35655 0.69 0.724331
Target:  5'- cUCgc-CUGCgGCcgGCGCGGCGCugGGGCc -3'
miRNA:   3'- uAGauuGAUGgCG--UGUGCCGCG--CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.