miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26412 3' -61.8 NC_005345.2 + 36846 0.66 0.40801
Target:  5'- cGC-CGCGCacucGGGGCACuCGAU-CCCg -3'
miRNA:   3'- -CGaGUGCGgca-CCCCGUG-GCUGcGGG- -5'
26412 3' -61.8 NC_005345.2 + 10580 0.66 0.365206
Target:  5'- aGCgccacgUACGCCGUGccgguGGGCGCguACGCCg -3'
miRNA:   3'- -CGa-----GUGCGGCAC-----CCCGUGgcUGCGGg -5'
26412 3' -61.8 NC_005345.2 + 9526 0.66 0.365206
Target:  5'- uCUCGuCGuCCGUGcGGGUccacacGCCGAgcUGCCCc -3'
miRNA:   3'- cGAGU-GC-GGCAC-CCCG------UGGCU--GCGGG- -5'
26412 3' -61.8 NC_005345.2 + 32759 0.66 0.355405
Target:  5'- -aUCAUGCCccucaugGUGGcGGCGCagagcggCGACGCCg -3'
miRNA:   3'- cgAGUGCGG-------CACC-CCGUG-------GCUGCGGg -5'
26412 3' -61.8 NC_005345.2 + 25230 0.66 0.357025
Target:  5'- aGCUCACGCaCGac-GGCucgUCGGCGCUCg -3'
miRNA:   3'- -CGAGUGCG-GCaccCCGu--GGCUGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 25040 0.66 0.365206
Target:  5'- ---gACGUCGUGGGcauguaCGCCGAC-CCCg -3'
miRNA:   3'- cgagUGCGGCACCCc-----GUGGCUGcGGG- -5'
26412 3' -61.8 NC_005345.2 + 36556 0.66 0.365206
Target:  5'- aGCUCguGCGCUucgGGGGCGgCGACaCCg -3'
miRNA:   3'- -CGAG--UGCGGca-CCCCGUgGCUGcGGg -5'
26412 3' -61.8 NC_005345.2 + 38863 0.66 0.365206
Target:  5'- cGCUCGgguccgguguCGCCGgccgcgagUGGacGGCAgagaUCGGCGCCCg -3'
miRNA:   3'- -CGAGU----------GCGGC--------ACC--CCGU----GGCUGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 40802 0.66 0.365206
Target:  5'- aCUCACGacgaCCG-GGGcguGCACCGcCGCCg -3'
miRNA:   3'- cGAGUGC----GGCaCCC---CGUGGCuGCGGg -5'
26412 3' -61.8 NC_005345.2 + 46392 0.66 0.365206
Target:  5'- aGC-CACGCCGUccgaaGGcGGCACuuguCGACcGCCg -3'
miRNA:   3'- -CGaGUGCGGCA-----CC-CCGUG----GCUG-CGGg -5'
26412 3' -61.8 NC_005345.2 + 14917 0.66 0.381102
Target:  5'- cGUUCGCgGCCGUGccgccccGGGCgaACUGcUGCCCc -3'
miRNA:   3'- -CGAGUG-CGGCAC-------CCCG--UGGCuGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 18210 0.66 0.381951
Target:  5'- cGgUCGCgGCCGUGcaccgugagcGGGcCGCCGGCGgUCg -3'
miRNA:   3'- -CgAGUG-CGGCAC----------CCC-GUGGCUGCgGG- -5'
26412 3' -61.8 NC_005345.2 + 2969 0.66 0.407124
Target:  5'- cGUUCGCGCCGUacuuguaGGcgauacgucggcGGUACgGGCGgCCg -3'
miRNA:   3'- -CGAGUGCGGCA-------CC------------CCGUGgCUGCgGG- -5'
26412 3' -61.8 NC_005345.2 + 46020 0.66 0.405354
Target:  5'- cGCUC-CgGUCGgacGGGGCGgccccucgguauguCCGGgGCCCg -3'
miRNA:   3'- -CGAGuG-CGGCa--CCCCGU--------------GGCUgCGGG- -5'
26412 3' -61.8 NC_005345.2 + 8538 0.66 0.399201
Target:  5'- gGCUCGCGgagagguacaccCCGUGcucgccGGCugCGAuCGUCCa -3'
miRNA:   3'- -CGAGUGC------------GGCACc-----CCGugGCU-GCGGG- -5'
26412 3' -61.8 NC_005345.2 + 5337 0.66 0.399201
Target:  5'- cGCUgCAgugcggUGCCGUGGGcGCGCU---GCCCg -3'
miRNA:   3'- -CGA-GU------GCGGCACCC-CGUGGcugCGGG- -5'
26412 3' -61.8 NC_005345.2 + 1576 0.66 0.399201
Target:  5'- -gUCGcCGCCGUGGGG-GCCGucacgaGCGUUCc -3'
miRNA:   3'- cgAGU-GCGGCACCCCgUGGC------UGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 45850 0.66 0.390514
Target:  5'- cGCgggCgACGaUCGUGgGGGCGgggagcCCGACGCCg -3'
miRNA:   3'- -CGa--G-UGC-GGCAC-CCCGU------GGCUGCGGg -5'
26412 3' -61.8 NC_005345.2 + 46142 0.66 0.381951
Target:  5'- cCUCggaACGCgGUGGGuucCACCGGgcaGCCCu -3'
miRNA:   3'- cGAG---UGCGgCACCCc--GUGGCUg--CGGG- -5'
26412 3' -61.8 NC_005345.2 + 46071 0.66 0.381951
Target:  5'- -aUCAgGCgGccGGGGcCGCCGGgGCCUg -3'
miRNA:   3'- cgAGUgCGgCa-CCCC-GUGGCUgCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.