miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26412 3' -61.8 NC_005345.2 + 201 0.67 0.348974
Target:  5'- cGCUCGCgauucugugGCUGUccagcGGGGagGCUGGCGCCa -3'
miRNA:   3'- -CGAGUG---------CGGCA-----CCCCg-UGGCUGCGGg -5'
26412 3' -61.8 NC_005345.2 + 1576 0.66 0.399201
Target:  5'- -gUCGcCGCCGUGGGG-GCCGucacgaGCGUUCc -3'
miRNA:   3'- cgAGU-GCGGCACCCCgUGGC------UGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 2528 0.68 0.269059
Target:  5'- -gUCaACGgCGacGGGGCAcCCGGCGCCg -3'
miRNA:   3'- cgAG-UGCgGCa-CCCCGU-GGCUGCGGg -5'
26412 3' -61.8 NC_005345.2 + 2969 0.66 0.407124
Target:  5'- cGUUCGCGCCGUacuuguaGGcgauacgucggcGGUACgGGCGgCCg -3'
miRNA:   3'- -CGAGUGCGGCA-------CC------------CCGUGgCUGCgGG- -5'
26412 3' -61.8 NC_005345.2 + 3361 0.66 0.399201
Target:  5'- cCUCGCGCaGUGguucuacgagcuGGGCGgCGAgGUCCg -3'
miRNA:   3'- cGAGUGCGgCAC------------CCCGUgGCUgCGGG- -5'
26412 3' -61.8 NC_005345.2 + 3710 0.7 0.204571
Target:  5'- uGCUC-UGCCGgGGGGUGCCugcGACGUCg -3'
miRNA:   3'- -CGAGuGCGGCaCCCCGUGG---CUGCGGg -5'
26412 3' -61.8 NC_005345.2 + 3887 0.7 0.199935
Target:  5'- uGCUCucCGCCGacgcucgcaguguggGGGuGCGCCGugGCUg -3'
miRNA:   3'- -CGAGu-GCGGCa--------------CCC-CGUGGCugCGGg -5'
26412 3' -61.8 NC_005345.2 + 4459 0.72 0.14602
Target:  5'- gGCUC-CGgCG-GGGGC-CCGGCGgCCg -3'
miRNA:   3'- -CGAGuGCgGCaCCCCGuGGCUGCgGG- -5'
26412 3' -61.8 NC_005345.2 + 4793 0.69 0.25622
Target:  5'- gGCUCGcCGCgGgUGGGGaACCGaAUGCUCg -3'
miRNA:   3'- -CGAGU-GCGgC-ACCCCgUGGC-UGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 5093 0.67 0.348974
Target:  5'- aGUUC-CGCCGcgaGcGcGGCAucCCGAUGCCCu -3'
miRNA:   3'- -CGAGuGCGGCa--C-C-CCGU--GGCUGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 5223 0.72 0.166478
Target:  5'- cGCUaCACGCCGUcGGGGUGCCcGCGgUa -3'
miRNA:   3'- -CGA-GUGCGGCA-CCCCGUGGcUGCgGg -5'
26412 3' -61.8 NC_005345.2 + 5281 0.75 0.095088
Target:  5'- cGCUC-CGCCGcGGaGUcccgGCCGACGCCCc -3'
miRNA:   3'- -CGAGuGCGGCaCCcCG----UGGCUGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 5337 0.66 0.399201
Target:  5'- cGCUgCAgugcggUGCCGUGGGcGCGCU---GCCCg -3'
miRNA:   3'- -CGA-GU------GCGGCACCC-CGUGGcugCGGG- -5'
26412 3' -61.8 NC_005345.2 + 5598 0.88 0.010395
Target:  5'- cGCUCGUGCCGUGGGGCGCCGG-GCUCg -3'
miRNA:   3'- -CGAGUGCGGCACCCCGUGGCUgCGGG- -5'
26412 3' -61.8 NC_005345.2 + 5961 0.68 0.275671
Target:  5'- gGCUCAUGCgGcGGcGGCAgCUGugGCUg -3'
miRNA:   3'- -CGAGUGCGgCaCC-CCGU-GGCugCGGg -5'
26412 3' -61.8 NC_005345.2 + 6078 0.67 0.339485
Target:  5'- aGCUCGgGCCaccccuugcacGGGGUAUCGACGagCCg -3'
miRNA:   3'- -CGAGUgCGGca---------CCCCGUGGCUGCg-GG- -5'
26412 3' -61.8 NC_005345.2 + 6707 0.69 0.258747
Target:  5'- cGC-CGCG-CGUGGGGaCGCCGAugacgaucgguaugcCGCCg -3'
miRNA:   3'- -CGaGUGCgGCACCCC-GUGGCU---------------GCGGg -5'
26412 3' -61.8 NC_005345.2 + 7126 0.71 0.194392
Target:  5'- cGCcgCGCGaaCCGggcGGGGCA-CGugGCCCg -3'
miRNA:   3'- -CGa-GUGC--GGCa--CCCCGUgGCugCGGG- -5'
26412 3' -61.8 NC_005345.2 + 7239 0.73 0.139973
Target:  5'- -aUCAUGCCGgggaccGGGGCgGCCGAaccgacaagcgucgcCGCCCg -3'
miRNA:   3'- cgAGUGCGGCa-----CCCCG-UGGCU---------------GCGGG- -5'
26412 3' -61.8 NC_005345.2 + 7817 0.68 0.301265
Target:  5'- ---gACGCCGUGaacgucggcguguaGGGCguccagccGCCGGCGCCg -3'
miRNA:   3'- cgagUGCGGCAC--------------CCCG--------UGGCUGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.