miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26412 3' -61.8 NC_005345.2 + 38764 1.12 0.000144
Target:  5'- gGCUCACGCCGUGGGGCACCGACGCCCu -3'
miRNA:   3'- -CGAGUGCGGCACCCCGUGGCUGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 5598 0.88 0.010395
Target:  5'- cGCUCGUGCCGUGGGGCGCCGG-GCUCg -3'
miRNA:   3'- -CGAGUGCGGCACCCCGUGGCUgCGGG- -5'
26412 3' -61.8 NC_005345.2 + 45539 0.8 0.042683
Target:  5'- gGCgCGgGCCGUGGGGUcaccuguggGCCGACGaCCCg -3'
miRNA:   3'- -CGaGUgCGGCACCCCG---------UGGCUGC-GGG- -5'
26412 3' -61.8 NC_005345.2 + 18202 0.78 0.051887
Target:  5'- gGCgCGCGCCGagUGGGGCGCCG-CGUUCg -3'
miRNA:   3'- -CGaGUGCGGC--ACCCCGUGGCuGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 18422 0.77 0.062835
Target:  5'- cGCUCACgGCCGUGauucuguGGGCgaACCuGCGCCCg -3'
miRNA:   3'- -CGAGUG-CGGCAC-------CCCG--UGGcUGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 37267 0.76 0.074347
Target:  5'- cGgUCGCGUCGUcgucgaGGGGCacgucgugcaggGCCGAUGCCCa -3'
miRNA:   3'- -CgAGUGCGGCA------CCCCG------------UGGCUGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 42017 0.76 0.082968
Target:  5'- cGCUCAccuuCGCCGgGGGauacgucccccGCACCGGCaGCCCg -3'
miRNA:   3'- -CGAGU----GCGGCaCCC-----------CGUGGCUG-CGGG- -5'
26412 3' -61.8 NC_005345.2 + 5281 0.75 0.095088
Target:  5'- cGCUC-CGCCGcGGaGUcccgGCCGACGCCCc -3'
miRNA:   3'- -CGAGuGCGGCaCCcCG----UGGCUGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 39153 0.75 0.100391
Target:  5'- cGCUCaccgGCGCCGUGucGCACCaugacGACGCCUa -3'
miRNA:   3'- -CGAG----UGCGGCACccCGUGG-----CUGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 20417 0.74 0.114893
Target:  5'- cCUCcCGCCGU-GGGCGCCGuaccUGCCCc -3'
miRNA:   3'- cGAGuGCGGCAcCCCGUGGCu---GCGGG- -5'
26412 3' -61.8 NC_005345.2 + 9721 0.74 0.114893
Target:  5'- aGC-CGCGCCGcgcGGGccgcgaccGCGCCGACGCUCc -3'
miRNA:   3'- -CGaGUGCGGCa--CCC--------CGUGGCUGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 29969 0.74 0.11802
Target:  5'- gGCUCGuCGUCGaGGGGCucgUCGGCGUCCu -3'
miRNA:   3'- -CGAGU-GCGGCaCCCCGu--GGCUGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 30161 0.73 0.121225
Target:  5'- cGCUCGgGCCGaggcucGGGCAUCGACGCg- -3'
miRNA:   3'- -CGAGUgCGGCac----CCCGUGGCUGCGgg -5'
26412 3' -61.8 NC_005345.2 + 34998 0.73 0.121225
Target:  5'- aCUCgGCGCCG-GGGcGCugCGGCGgCCa -3'
miRNA:   3'- cGAG-UGCGGCaCCC-CGugGCUGCgGG- -5'
26412 3' -61.8 NC_005345.2 + 27117 0.73 0.12788
Target:  5'- uGCUCgGCGCCacGGcGGCACCGGCcggcgucgagcuGCCCg -3'
miRNA:   3'- -CGAG-UGCGGcaCC-CCGUGGCUG------------CGGG- -5'
26412 3' -61.8 NC_005345.2 + 7239 0.73 0.139973
Target:  5'- -aUCAUGCCGgggaccGGGGCgGCCGAaccgacaagcgucgcCGCCCg -3'
miRNA:   3'- cgAGUGCGGCa-----CCCCG-UGGCU---------------GCGGG- -5'
26412 3' -61.8 NC_005345.2 + 4459 0.72 0.14602
Target:  5'- gGCUC-CGgCG-GGGGC-CCGGCGgCCg -3'
miRNA:   3'- -CGAGuGCgGCaCCCCGuGGCUGCgGG- -5'
26412 3' -61.8 NC_005345.2 + 28801 0.72 0.153913
Target:  5'- uGCUCACGCaCGgcaaGGuccGCACCGcGCGCCUg -3'
miRNA:   3'- -CGAGUGCG-GCa---CCc--CGUGGC-UGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 5223 0.72 0.166478
Target:  5'- cGCUaCACGCCGUcGGGGUGCCcGCGgUa -3'
miRNA:   3'- -CGA-GUGCGGCA-CCCCGUGGcUGCgGg -5'
26412 3' -61.8 NC_005345.2 + 46599 0.72 0.166478
Target:  5'- cCUCGCGCUGgaucGGGGC--CGGCGCCg -3'
miRNA:   3'- cGAGUGCGGCa---CCCCGugGCUGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.