miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26412 3' -61.8 NC_005345.2 + 38764 1.12 0.000144
Target:  5'- gGCUCACGCCGUGGGGCACCGACGCCCu -3'
miRNA:   3'- -CGAGUGCGGCACCCCGUGGCUGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 3887 0.7 0.199935
Target:  5'- uGCUCucCGCCGacgcucgcaguguggGGGuGCGCCGugGCUg -3'
miRNA:   3'- -CGAGu-GCGGCa--------------CCC-CGUGGCugCGGg -5'
26412 3' -61.8 NC_005345.2 + 34194 0.7 0.204052
Target:  5'- cGCUCgggcugaACGCCGUcaccauGGGGCAgCaguuCGCCCg -3'
miRNA:   3'- -CGAG-------UGCGGCA------CCCCGUgGcu--GCGGG- -5'
26412 3' -61.8 NC_005345.2 + 16866 0.66 0.40801
Target:  5'- uGCagGCGCgguacggccgagCGUGGcGGCGgaaGGCGCCCg -3'
miRNA:   3'- -CGagUGCG------------GCACC-CCGUgg-CUGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 18422 0.77 0.062835
Target:  5'- cGCUCACgGCCGUGauucuguGGGCgaACCuGCGCCCg -3'
miRNA:   3'- -CGAGUG-CGGCAC-------CCCG--UGGcUGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 42017 0.76 0.082968
Target:  5'- cGCUCAccuuCGCCGgGGGauacgucccccGCACCGGCaGCCCg -3'
miRNA:   3'- -CGAGU----GCGGCaCCC-----------CGUGGCUG-CGGG- -5'
26412 3' -61.8 NC_005345.2 + 39153 0.75 0.100391
Target:  5'- cGCUCaccgGCGCCGUGucGCACCaugacGACGCCUa -3'
miRNA:   3'- -CGAG----UGCGGCACccCGUGG-----CUGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 9721 0.74 0.114893
Target:  5'- aGC-CGCGCCGcgcGGGccgcgaccGCGCCGACGCUCc -3'
miRNA:   3'- -CGaGUGCGGCa--CCC--------CGUGGCUGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 27117 0.73 0.12788
Target:  5'- uGCUCgGCGCCacGGcGGCACCGGCcggcgucgagcuGCCCg -3'
miRNA:   3'- -CGAG-UGCGGcaCC-CCGUGGCUG------------CGGG- -5'
26412 3' -61.8 NC_005345.2 + 7126 0.71 0.194392
Target:  5'- cGCcgCGCGaaCCGggcGGGGCA-CGugGCCCg -3'
miRNA:   3'- -CGa-GUGC--GGCa--CCCCGUgGCugCGGG- -5'
26412 3' -61.8 NC_005345.2 + 26044 0.72 0.166478
Target:  5'- cGCUCGCcuGCCGUGGGG-ACCGGa-CUCa -3'
miRNA:   3'- -CGAGUG--CGGCACCCCgUGGCUgcGGG- -5'
26412 3' -61.8 NC_005345.2 + 30161 0.73 0.121225
Target:  5'- cGCUCGgGCCGaggcucGGGCAUCGACGCg- -3'
miRNA:   3'- -CGAGUgCGGCac----CCCGUGGCUGCGgg -5'
26412 3' -61.8 NC_005345.2 + 5598 0.88 0.010395
Target:  5'- cGCUCGUGCCGUGGGGCGCCGG-GCUCg -3'
miRNA:   3'- -CGAGUGCGGCACCCCGUGGCUgCGGG- -5'
26412 3' -61.8 NC_005345.2 + 26674 0.71 0.175359
Target:  5'- gGCUCACGugaCCaUGGcGGUaaagGCCGACGCCg -3'
miRNA:   3'- -CGAGUGC---GGcACC-CCG----UGGCUGCGGg -5'
26412 3' -61.8 NC_005345.2 + 45539 0.8 0.042683
Target:  5'- gGCgCGgGCCGUGGGGUcaccuguggGCCGACGaCCCg -3'
miRNA:   3'- -CGaGUgCGGCACCCCG---------UGGCUGC-GGG- -5'
26412 3' -61.8 NC_005345.2 + 20417 0.74 0.114893
Target:  5'- cCUCcCGCCGU-GGGCGCCGuaccUGCCCc -3'
miRNA:   3'- cGAGuGCGGCAcCCCGUGGCu---GCGGG- -5'
26412 3' -61.8 NC_005345.2 + 12350 0.71 0.184659
Target:  5'- cGCUC-CGCaauCGgcugcacGGGGC-CCGACGCCUc -3'
miRNA:   3'- -CGAGuGCG---GCa------CCCCGuGGCUGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 9800 0.7 0.204052
Target:  5'- uGUUCGcCGCUGUGucgcGGCcggugccGCCGAUGCCCg -3'
miRNA:   3'- -CGAGU-GCGGCACc---CCG-------UGGCUGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 18202 0.78 0.051887
Target:  5'- gGCgCGCGCCGagUGGGGCGCCG-CGUUCg -3'
miRNA:   3'- -CGaGUGCGGC--ACCCCGUGGCuGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 5281 0.75 0.095088
Target:  5'- cGCUC-CGCCGcGGaGUcccgGCCGACGCCCc -3'
miRNA:   3'- -CGAGuGCGGCaCCcCG----UGGCUGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.