Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26414 | 5' | -53.5 | NC_005345.2 | + | 44441 | 0.66 | 0.79059 |
Target: 5'- uUgGCACCGUGAuCGcCGCCcuguucgccgcacggGCGUCGa -3' miRNA: 3'- cAgCGUGGUACU-GCuGCGGa--------------UGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 19002 | 0.66 | 0.789592 |
Target: 5'- --gGC-CCGagcggGGCGGCGCCUcgACGUCGc -3' miRNA: 3'- cagCGuGGUa----CUGCUGCGGA--UGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 11830 | 0.66 | 0.788593 |
Target: 5'- -cCGgACCGUGGgcgagguCGACGCCacggcguggGCAUCGg -3' miRNA: 3'- caGCgUGGUACU-------GCUGCGGa--------UGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 44765 | 0.66 | 0.788593 |
Target: 5'- aUCGCGCuCAUG-CGGCGCCguccuuccgcugcUGC-UCGg -3' miRNA: 3'- cAGCGUG-GUACuGCUGCGG-------------AUGuAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 41882 | 0.66 | 0.769296 |
Target: 5'- aUCGCGCgGgcGGCGACGCUU--GUCGg -3' miRNA: 3'- cAGCGUGgUa-CUGCUGCGGAugUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 19493 | 0.66 | 0.758922 |
Target: 5'- -aCaCGCCGUcGACGGCGaCCUucGCGUCGu -3' miRNA: 3'- caGcGUGGUA-CUGCUGC-GGA--UGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 29005 | 0.66 | 0.758922 |
Target: 5'- cUCGCGCgGUGGCucccgaacgucGACGUCgacgACAUCa -3' miRNA: 3'- cAGCGUGgUACUG-----------CUGCGGa---UGUAGc -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 26047 | 0.67 | 0.748414 |
Target: 5'- cUCGCucGCCucGGCGAgCGCCUGC-UCGa -3' miRNA: 3'- cAGCG--UGGuaCUGCU-GCGGAUGuAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 595 | 0.67 | 0.748414 |
Target: 5'- -cCGCAUCc--GCGACGCCcGCAUCc -3' miRNA: 3'- caGCGUGGuacUGCUGCGGaUGUAGc -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 41845 | 0.67 | 0.737784 |
Target: 5'- cGUCGCACCGcGGCu-CGuCCUGCGguUCGc -3' miRNA: 3'- -CAGCGUGGUaCUGcuGC-GGAUGU--AGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 22144 | 0.67 | 0.737784 |
Target: 5'- gGUCGCGCUAccGCGACGCUgugGCGa-- -3' miRNA: 3'- -CAGCGUGGUacUGCUGCGGa--UGUagc -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 51 | 0.67 | 0.727043 |
Target: 5'- uGUCGUACCcgGAUgccacauaGAUGCC-ACAUCc -3' miRNA: 3'- -CAGCGUGGuaCUG--------CUGCGGaUGUAGc -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 45821 | 0.67 | 0.727043 |
Target: 5'- cGUCGCgACCGUGACG-UGCacgGCggCGg -3' miRNA: 3'- -CAGCG-UGGUACUGCuGCGga-UGuaGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 10044 | 0.67 | 0.727043 |
Target: 5'- uGUCGagacggagaACC--GACGACGCCgACGUCGc -3' miRNA: 3'- -CAGCg--------UGGuaCUGCUGCGGaUGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 32786 | 0.67 | 0.727043 |
Target: 5'- cGUCGCgAUCAccGCGGCGCCgGCcgCGa -3' miRNA: 3'- -CAGCG-UGGUacUGCUGCGGaUGuaGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 39906 | 0.67 | 0.727043 |
Target: 5'- -cCGCACCGUGgucGCGGCGUacgaCUugaGCGUCGc -3' miRNA: 3'- caGCGUGGUAC---UGCUGCG----GA---UGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 5600 | 0.67 | 0.716205 |
Target: 5'- cUCGUGCCGUGG-GGCGCCggGC-UCGu -3' miRNA: 3'- cAGCGUGGUACUgCUGCGGa-UGuAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 46211 | 0.67 | 0.716205 |
Target: 5'- -cCGC-CCGguUGAuCGACGuCCUGCGUUGg -3' miRNA: 3'- caGCGuGGU--ACU-GCUGC-GGAUGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 6705 | 0.67 | 0.716205 |
Target: 5'- aUCGcCGCgCGUGGgGACGCCgaugACgAUCGg -3' miRNA: 3'- cAGC-GUG-GUACUgCUGCGGa---UG-UAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 13234 | 0.67 | 0.716205 |
Target: 5'- uUCGCcgcguccccgaGCCAcccGACGAUGCCgcCGUCGg -3' miRNA: 3'- cAGCG-----------UGGUa--CUGCUGCGGauGUAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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