miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26414 5' -53.5 NC_005345.2 + 24361 0.69 0.587169
Target:  5'- -cUGCACCAccuugccgaggucgGACGACGCCcGCAcuUCGg -3'
miRNA:   3'- caGCGUGGUa-------------CUGCUGCGGaUGU--AGC- -5'
26414 5' -53.5 NC_005345.2 + 44978 0.67 0.70528
Target:  5'- -cCGCcCCGUGA--GCGCCUgccGCGUCGa -3'
miRNA:   3'- caGCGuGGUACUgcUGCGGA---UGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 37721 0.68 0.672109
Target:  5'- aUCGCGCUgcGgcGCGGCGCCggcuggucgGCGUCGu -3'
miRNA:   3'- cAGCGUGGuaC--UGCUGCGGa--------UGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 18739 0.68 0.649781
Target:  5'- -gCGCGCCAUGAgcgcgGACGCgU-CGUCGa -3'
miRNA:   3'- caGCGUGGUACUg----CUGCGgAuGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 30542 0.69 0.627385
Target:  5'- -gCGUGCCgGUGACGGCGCCgaccGCuuUCGa -3'
miRNA:   3'- caGCGUGG-UACUGCUGCGGa---UGu-AGC- -5'
26414 5' -53.5 NC_005345.2 + 45351 0.69 0.605006
Target:  5'- cGUCGCACCgGUGugGAC-CgUGCGgcgCGg -3'
miRNA:   3'- -CAGCGUGG-UACugCUGcGgAUGUa--GC- -5'
26414 5' -53.5 NC_005345.2 + 21047 0.69 0.605006
Target:  5'- -gCGCGCC--GGCGAcCGCCU-CGUCGa -3'
miRNA:   3'- caGCGUGGuaCUGCU-GCGGAuGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 19404 0.69 0.605006
Target:  5'- cGUCGCGCCGagcucggucGGCuGCGCC-GCGUCGg -3'
miRNA:   3'- -CAGCGUGGUa--------CUGcUGCGGaUGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 16107 0.69 0.593848
Target:  5'- cUCGCGCCAUGugagcaGCGGCcgGCCggcgGCGUCc -3'
miRNA:   3'- cAGCGUGGUAC------UGCUG--CGGa---UGUAGc -5'
26414 5' -53.5 NC_005345.2 + 6705 0.67 0.716205
Target:  5'- aUCGcCGCgCGUGGgGACGCCgaugACgAUCGg -3'
miRNA:   3'- cAGC-GUG-GUACUgCUGCGGa---UG-UAGC- -5'
26414 5' -53.5 NC_005345.2 + 13234 0.67 0.716205
Target:  5'- uUCGCcgcguccccgaGCCAcccGACGAUGCCgcCGUCGg -3'
miRNA:   3'- cAGCG-----------UGGUa--CUGCUGCGGauGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 51 0.67 0.727043
Target:  5'- uGUCGUACCcgGAUgccacauaGAUGCC-ACAUCc -3'
miRNA:   3'- -CAGCGUGGuaCUG--------CUGCGGaUGUAGc -5'
26414 5' -53.5 NC_005345.2 + 44765 0.66 0.788593
Target:  5'- aUCGCGCuCAUG-CGGCGCCguccuuccgcugcUGC-UCGg -3'
miRNA:   3'- cAGCGUG-GUACuGCUGCGG-------------AUGuAGC- -5'
26414 5' -53.5 NC_005345.2 + 19493 0.66 0.758922
Target:  5'- -aCaCGCCGUcGACGGCGaCCUucGCGUCGu -3'
miRNA:   3'- caGcGUGGUA-CUGCUGC-GGA--UGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 26047 0.67 0.748414
Target:  5'- cUCGCucGCCucGGCGAgCGCCUGC-UCGa -3'
miRNA:   3'- cAGCG--UGGuaCUGCU-GCGGAUGuAGC- -5'
26414 5' -53.5 NC_005345.2 + 595 0.67 0.748414
Target:  5'- -cCGCAUCc--GCGACGCCcGCAUCc -3'
miRNA:   3'- caGCGUGGuacUGCUGCGGaUGUAGc -5'
26414 5' -53.5 NC_005345.2 + 32786 0.67 0.727043
Target:  5'- cGUCGCgAUCAccGCGGCGCCgGCcgCGa -3'
miRNA:   3'- -CAGCG-UGGUacUGCUGCGGaUGuaGC- -5'
26414 5' -53.5 NC_005345.2 + 10044 0.67 0.727043
Target:  5'- uGUCGagacggagaACC--GACGACGCCgACGUCGc -3'
miRNA:   3'- -CAGCg--------UGGuaCUGCUGCGGaUGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 45821 0.67 0.727043
Target:  5'- cGUCGCgACCGUGACG-UGCacgGCggCGg -3'
miRNA:   3'- -CAGCG-UGGUACUGCuGCGga-UGuaGC- -5'
26414 5' -53.5 NC_005345.2 + 39906 0.67 0.727043
Target:  5'- -cCGCACCGUGgucGCGGCGUacgaCUugaGCGUCGc -3'
miRNA:   3'- caGCGUGGUAC---UGCUGCG----GA---UGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.