Results 1 - 20 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26418 | 5' | -63.4 | NC_005345.2 | + | 37236 | 0.66 | 0.312236 |
Target: 5'- gGCGGCGUGCCguaguaGCGGgcgACGGcGGCg- -3' miRNA: 3'- gCGUCGUGCGGg-----CGCCa--UGCC-CCGag -5' |
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26418 | 5' | -63.4 | NC_005345.2 | + | 30943 | 0.66 | 0.304924 |
Target: 5'- aCGguGCACGgCCGCGac-CGGGuGCa- -3' miRNA: 3'- -GCguCGUGCgGGCGCcauGCCC-CGag -5' |
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26418 | 5' | -63.4 | NC_005345.2 | + | 47989 | 0.66 | 0.304924 |
Target: 5'- cCGC-GCACGCUccccuCGCGGcGCGGuggugucccaGGCUCc -3' miRNA: 3'- -GCGuCGUGCGG-----GCGCCaUGCC----------CCGAG- -5' |
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26418 | 5' | -63.4 | NC_005345.2 | + | 2661 | 0.66 | 0.311498 |
Target: 5'- uCGCAGCG-GCCacgaaGaCGGUcgaugcgGCGGGGCg- -3' miRNA: 3'- -GCGUCGUgCGGg----C-GCCA-------UGCCCCGag -5' |
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26418 | 5' | -63.4 | NC_005345.2 | + | 23597 | 0.66 | 0.290697 |
Target: 5'- uCGCGGCguucggcgcgACGCCgGCGG-ACcGGGCa- -3' miRNA: 3'- -GCGUCG----------UGCGGgCGCCaUGcCCCGag -5' |
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26418 | 5' | -63.4 | NC_005345.2 | + | 16859 | 0.66 | 0.283781 |
Target: 5'- gCGCAGC-UGCaggCGCGGUACGGccgagcguGGCg- -3' miRNA: 3'- -GCGUCGuGCGg--GCGCCAUGCC--------CCGag -5' |
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26418 | 5' | -63.4 | NC_005345.2 | + | 30367 | 0.66 | 0.297745 |
Target: 5'- cCGaCGGCA-GCCCGCGG--CGGGcGCa- -3' miRNA: 3'- -GC-GUCGUgCGGGCGCCauGCCC-CGag -5' |
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26418 | 5' | -63.4 | NC_005345.2 | + | 34599 | 0.66 | 0.300601 |
Target: 5'- aCGCGuucaGCGCCggcgucaacugggugCGCGaGUACGGGGCg- -3' miRNA: 3'- -GCGUcg--UGCGG---------------GCGC-CAUGCCCCGag -5' |
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26418 | 5' | -63.4 | NC_005345.2 | + | 16255 | 0.66 | 0.283781 |
Target: 5'- cCGCAGCGCccccaGCCUGCGGgcCGGu-CUCc -3' miRNA: 3'- -GCGUCGUG-----CGGGCGCCauGCCccGAG- -5' |
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26418 | 5' | -63.4 | NC_005345.2 | + | 36376 | 0.66 | 0.290697 |
Target: 5'- aCGCgGGCGCGCuCCGCGGccGCGGcGUg- -3' miRNA: 3'- -GCG-UCGUGCG-GGCGCCa-UGCCcCGag -5' |
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26418 | 5' | -63.4 | NC_005345.2 | + | 16359 | 0.66 | 0.290697 |
Target: 5'- uCGCGGCcgGCG-CCGCGGUgaucGCGacgaucGGGUUCg -3' miRNA: 3'- -GCGUCG--UGCgGGCGCCA----UGC------CCCGAG- -5' |
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26418 | 5' | -63.4 | NC_005345.2 | + | 10604 | 0.66 | 0.312236 |
Target: 5'- gGCGcGUACGCCgagaccuucUGuCGGUAcgggcccacccCGGGGCUCg -3' miRNA: 3'- gCGU-CGUGCGG---------GC-GCCAU-----------GCCCCGAG- -5' |
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26418 | 5' | -63.4 | NC_005345.2 | + | 47598 | 0.66 | 0.297745 |
Target: 5'- aCGguGCA-GUCUGCuGGUGUGGGGCa- -3' miRNA: 3'- -GCguCGUgCGGGCG-CCAUGCCCCGag -5' |
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26418 | 5' | -63.4 | NC_005345.2 | + | 43463 | 0.66 | 0.290697 |
Target: 5'- gGCGGCGaGUUCGCGGcgcagcGCGGucGGCUCg -3' miRNA: 3'- gCGUCGUgCGGGCGCCa-----UGCC--CCGAG- -5' |
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26418 | 5' | -63.4 | NC_005345.2 | + | 41564 | 0.66 | 0.290697 |
Target: 5'- uGC-GCGCGCUCGCcGUgcucGCGGGcguGCUCg -3' miRNA: 3'- gCGuCGUGCGGGCGcCA----UGCCC---CGAG- -5' |
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26418 | 5' | -63.4 | NC_005345.2 | + | 31765 | 0.66 | 0.290697 |
Target: 5'- uGCgAGUGCGUCuCG-GGUGCGGGGUc- -3' miRNA: 3'- gCG-UCGUGCGG-GCgCCAUGCCCCGag -5' |
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26418 | 5' | -63.4 | NC_005345.2 | + | 9954 | 0.66 | 0.283781 |
Target: 5'- aGCAGCA-GCUCGCGc-GCGGuGaGCUCg -3' miRNA: 3'- gCGUCGUgCGGGCGCcaUGCC-C-CGAG- -5' |
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26418 | 5' | -63.4 | NC_005345.2 | + | 46001 | 0.66 | 0.277668 |
Target: 5'- gGUGGCGgGCCCuCGGggucgcuccggucggACGGGGCg- -3' miRNA: 3'- gCGUCGUgCGGGcGCCa--------------UGCCCCGag -5' |
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26418 | 5' | -63.4 | NC_005345.2 | + | 7576 | 0.66 | 0.283781 |
Target: 5'- cCG-AGCACGCCCGCGaGcACGGcGaGCg- -3' miRNA: 3'- -GCgUCGUGCGGGCGC-CaUGCC-C-CGag -5' |
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26418 | 5' | -63.4 | NC_005345.2 | + | 10960 | 0.66 | 0.276996 |
Target: 5'- cCGCcGCccuACGCCCGUccGG-ACGGGcaGCUCa -3' miRNA: 3'- -GCGuCG---UGCGGGCG--CCaUGCCC--CGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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