miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26418 5' -63.4 NC_005345.2 + 41114 1.08 0.000178
Target:  5'- cCGCAGCACGCCCGCGGUACGGGGCUCc -3'
miRNA:   3'- -GCGUCGUGCGGGCGCCAUGCCCCGAG- -5'
26418 5' -63.4 NC_005345.2 + 18213 0.69 0.195191
Target:  5'- aGUGGgGCGCCgCGUucgGGUACG-GGCUCg -3'
miRNA:   3'- gCGUCgUGCGG-GCG---CCAUGCcCCGAG- -5'
26418 5' -63.4 NC_005345.2 + 11382 0.68 0.205434
Target:  5'- uCGCGGC-CGCCUGCGG-GCGagcaGCUCg -3'
miRNA:   3'- -GCGUCGuGCGGGCGCCaUGCcc--CGAG- -5'
26418 5' -63.4 NC_005345.2 + 2661 0.66 0.311498
Target:  5'- uCGCAGCG-GCCacgaaGaCGGUcgaugcgGCGGGGCg- -3'
miRNA:   3'- -GCGUCGUgCGGg----C-GCCA-------UGCCCCGag -5'
26418 5' -63.4 NC_005345.2 + 11575 0.74 0.083135
Target:  5'- gGCAGCucgacgacggGCGCCuCGCGGUGgcgUGGGGCg- -3'
miRNA:   3'- gCGUCG----------UGCGG-GCGCCAU---GCCCCGag -5'
26418 5' -63.4 NC_005345.2 + 19949 0.72 0.106253
Target:  5'- aGCAGCGCGCCC-CGaa--GGGGCUg -3'
miRNA:   3'- gCGUCGUGCGGGcGCcaugCCCCGAg -5'
26418 5' -63.4 NC_005345.2 + 10639 0.72 0.118364
Target:  5'- aGCAGCACGCgugacucagggaCCGCGGaccgGUGGGGCg- -3'
miRNA:   3'- gCGUCGUGCG------------GGCGCCa---UGCCCCGag -5'
26418 5' -63.4 NC_005345.2 + 14904 0.71 0.131752
Target:  5'- aGCAGCGgGCgaagcgggCCGCGGcGCGGcGGCUg -3'
miRNA:   3'- gCGUCGUgCG--------GGCGCCaUGCC-CCGAg -5'
26418 5' -63.4 NC_005345.2 + 38897 0.7 0.150445
Target:  5'- gGCAGagaucgGCGCCCG-GGUgaccGCGGGGCg- -3'
miRNA:   3'- gCGUCg-----UGCGGGCgCCA----UGCCCCGag -5'
26418 5' -63.4 NC_005345.2 + 43514 0.69 0.19469
Target:  5'- uCGCGGCgaacccgGCGCUCGCGGaGCGGaucgccgaGCUCg -3'
miRNA:   3'- -GCGUCG-------UGCGGGCGCCaUGCCc-------CGAG- -5'
26418 5' -63.4 NC_005345.2 + 41643 0.7 0.16754
Target:  5'- gGCAGCACGCCCaccgaaugGCGGcccgccacucccuucACGuGGGCUa -3'
miRNA:   3'- gCGUCGUGCGGG--------CGCCa--------------UGC-CCCGAg -5'
26418 5' -63.4 NC_005345.2 + 28759 0.71 0.140441
Target:  5'- uGCAG-GCGCCCGCGGUcaAcaccaucgacccgucCGGGGCg- -3'
miRNA:   3'- gCGUCgUGCGGGCGCCA--U---------------GCCCCGag -5'
26418 5' -63.4 NC_005345.2 + 23698 0.85 0.010066
Target:  5'- aGC-GCACGCgaGCGGUACGGGGCUCu -3'
miRNA:   3'- gCGuCGUGCGggCGCCAUGCCCCGAG- -5'
26418 5' -63.4 NC_005345.2 + 41451 0.69 0.18732
Target:  5'- aGCAGCACcaCCUuCGGUACcggcgggcugcgcugGGGGCUCc -3'
miRNA:   3'- gCGUCGUGc-GGGcGCCAUG---------------CCCCGAG- -5'
26418 5' -63.4 NC_005345.2 + 8931 0.74 0.074476
Target:  5'- gGCGGC-CGCCCccguggGCGGgcUGCGGGuGCUCg -3'
miRNA:   3'- gCGUCGuGCGGG------CGCC--AUGCCC-CGAG- -5'
26418 5' -63.4 NC_005345.2 + 7346 0.71 0.138957
Target:  5'- aCGCGGUgugGCCCGCGGUggcgcagccggGCGGGGgUg -3'
miRNA:   3'- -GCGUCGug-CGGGCGCCA-----------UGCCCCgAg -5'
26418 5' -63.4 NC_005345.2 + 4731 0.69 0.190238
Target:  5'- -uCAGCGCGCUCG-GGUucACcGGGCUCg -3'
miRNA:   3'- gcGUCGUGCGGGCgCCA--UGcCCCGAG- -5'
26418 5' -63.4 NC_005345.2 + 41852 0.68 0.198724
Target:  5'- cCGCGGCuCGuCCUGCGGUucgccucggcgaucGCGcGGGCg- -3'
miRNA:   3'- -GCGUCGuGC-GGGCGCCA--------------UGC-CCCGag -5'
26418 5' -63.4 NC_005345.2 + 12145 0.74 0.078691
Target:  5'- gGCGGCAUGCCgagggagcUGCGc-ACGGGGCUCg -3'
miRNA:   3'- gCGUCGUGCGG--------GCGCcaUGCCCCGAG- -5'
26418 5' -63.4 NC_005345.2 + 6620 0.72 0.109167
Target:  5'- gGCGGCgguuGCGCCCgGCGGUGCGacGGCgUCa -3'
miRNA:   3'- gCGUCG----UGCGGG-CGCCAUGCc-CCG-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.