miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26418 5' -63.4 NC_005345.2 + 299 0.73 0.100643
Target:  5'- aCGCAGCAcCGcCCCGCcccccggaaGGgGCGGGGCg- -3'
miRNA:   3'- -GCGUCGU-GC-GGGCG---------CCaUGCCCCGag -5'
26418 5' -63.4 NC_005345.2 + 1211 0.76 0.059517
Target:  5'- cCGCGGgcCACGCCgCGCGGUACGGGucccaugGCUUu -3'
miRNA:   3'- -GCGUC--GUGCGG-GCGCCAUGCCC-------CGAG- -5'
26418 5' -63.4 NC_005345.2 + 2661 0.66 0.311498
Target:  5'- uCGCAGCG-GCCacgaaGaCGGUcgaugcgGCGGGGCg- -3'
miRNA:   3'- -GCGUCGUgCGGg----C-GCCA-------UGCCCCGag -5'
26418 5' -63.4 NC_005345.2 + 3035 0.7 0.154463
Target:  5'- gGCAGCAUGCUCGCu-UGCGgGGGCg- -3'
miRNA:   3'- gCGUCGUGCGGGCGccAUGC-CCCGag -5'
26418 5' -63.4 NC_005345.2 + 4010 0.69 0.19469
Target:  5'- cCGCAGCGCGUCCGCGuugucccgccccuGUGCGacgacGGCg- -3'
miRNA:   3'- -GCGUCGUGCGGGCGC-------------CAUGCc----CCGag -5'
26418 5' -63.4 NC_005345.2 + 4259 0.67 0.263815
Target:  5'- uGCucGGCGaacaCCgGCGGUGCGGGcaGCUCg -3'
miRNA:   3'- gCG--UCGUgc--GGgCGCCAUGCCC--CGAG- -5'
26418 5' -63.4 NC_005345.2 + 4731 0.69 0.190238
Target:  5'- -uCAGCGCGCUCG-GGUucACcGGGCUCg -3'
miRNA:   3'- gcGUCGUGCGGGCgCCA--UGcCCCGAG- -5'
26418 5' -63.4 NC_005345.2 + 5232 0.68 0.21614
Target:  5'- cCGuCGGggUGCCCGCGGUACacgguGGGCg- -3'
miRNA:   3'- -GC-GUCguGCGGGCGCCAUGc----CCCGag -5'
26418 5' -63.4 NC_005345.2 + 5829 0.68 0.21614
Target:  5'- aGCAGCuCGCCCGCuGGUucCGGcuguGGCg- -3'
miRNA:   3'- gCGUCGuGCGGGCG-CCAu-GCC----CCGag -5'
26418 5' -63.4 NC_005345.2 + 6620 0.72 0.109167
Target:  5'- gGCGGCgguuGCGCCCgGCGGUGCGacGGCgUCa -3'
miRNA:   3'- gCGUCG----UGCGGG-CGCCAUGCc-CCG-AG- -5'
26418 5' -63.4 NC_005345.2 + 7304 0.7 0.146523
Target:  5'- cCGCAGgACGagCCGCGGUGCGacGGCgUCg -3'
miRNA:   3'- -GCGUCgUGCg-GGCGCCAUGCc-CCG-AG- -5'
26418 5' -63.4 NC_005345.2 + 7346 0.71 0.138957
Target:  5'- aCGCGGUgugGCCCGCGGUggcgcagccggGCGGGGgUg -3'
miRNA:   3'- -GCGUCGug-CGGGCGCCA-----------UGCCCCgAg -5'
26418 5' -63.4 NC_005345.2 + 7576 0.66 0.283781
Target:  5'- cCG-AGCACGCCCGCGaGcACGGcGaGCg- -3'
miRNA:   3'- -GCgUCGUGCGGGCGC-CaUGCC-C-CGag -5'
26418 5' -63.4 NC_005345.2 + 8245 0.69 0.190238
Target:  5'- cCGCAGgACGUcgCCG-GGUucgagcGCGGGGUUCa -3'
miRNA:   3'- -GCGUCgUGCG--GGCgCCA------UGCCCCGAG- -5'
26418 5' -63.4 NC_005345.2 + 8931 0.74 0.074476
Target:  5'- gGCGGC-CGCCCccguggGCGGgcUGCGGGuGCUCg -3'
miRNA:   3'- gCGUCGuGCGGG------CGCC--AUGCCC-CGAG- -5'
26418 5' -63.4 NC_005345.2 + 9064 0.68 0.204911
Target:  5'- gCGCGGCGCcauugcuGCCCGCGGUcgACGGugacGGUc- -3'
miRNA:   3'- -GCGUCGUG-------CGGGCGCCA--UGCC----CCGag -5'
26418 5' -63.4 NC_005345.2 + 9344 0.67 0.245004
Target:  5'- gGuCGGCAUGUCCaCGGUGaucaGGGGCa- -3'
miRNA:   3'- gC-GUCGUGCGGGcGCCAUg---CCCCGag -5'
26418 5' -63.4 NC_005345.2 + 9954 0.66 0.283781
Target:  5'- aGCAGCA-GCUCGCGc-GCGGuGaGCUCg -3'
miRNA:   3'- gCGUCGUgCGGGCGCcaUGCC-C-CGAG- -5'
26418 5' -63.4 NC_005345.2 + 10604 0.66 0.312236
Target:  5'- gGCGcGUACGCCgagaccuucUGuCGGUAcgggcccacccCGGGGCUCg -3'
miRNA:   3'- gCGU-CGUGCGG---------GC-GCCAU-----------GCCCCGAG- -5'
26418 5' -63.4 NC_005345.2 + 10639 0.72 0.118364
Target:  5'- aGCAGCACGCgugacucagggaCCGCGGaccgGUGGGGCg- -3'
miRNA:   3'- gCGUCGUGCG------------GGCGCCa---UGCCCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.