miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26418 5' -63.4 NC_005345.2 + 41114 1.08 0.000178
Target:  5'- cCGCAGCACGCCCGCGGUACGGGGCUCc -3'
miRNA:   3'- -GCGUCGUGCGGGCGCCAUGCCCCGAG- -5'
26418 5' -63.4 NC_005345.2 + 23698 0.85 0.010066
Target:  5'- aGC-GCACGCgaGCGGUACGGGGCUCu -3'
miRNA:   3'- gCGuCGUGCGggCGCCAUGCCCCGAG- -5'
26418 5' -63.4 NC_005345.2 + 1211 0.76 0.059517
Target:  5'- cCGCGGgcCACGCCgCGCGGUACGGGucccaugGCUUu -3'
miRNA:   3'- -GCGUC--GUGCGG-GCGCCAUGCCC-------CGAG- -5'
26418 5' -63.4 NC_005345.2 + 19013 0.75 0.070477
Target:  5'- gGCGGCGCcucgacgucgccGCCCGagccguCGGUACGGGGgUCg -3'
miRNA:   3'- gCGUCGUG------------CGGGC------GCCAUGCCCCgAG- -5'
26418 5' -63.4 NC_005345.2 + 17849 0.74 0.07245
Target:  5'- gCGCAGCAgCGCCCgGCGGgaauccuCGGGGUcCg -3'
miRNA:   3'- -GCGUCGU-GCGGG-CGCCau-----GCCCCGaG- -5'
26418 5' -63.4 NC_005345.2 + 8931 0.74 0.074476
Target:  5'- gGCGGC-CGCCCccguggGCGGgcUGCGGGuGCUCg -3'
miRNA:   3'- gCGUCGuGCGGG------CGCC--AUGCCC-CGAG- -5'
26418 5' -63.4 NC_005345.2 + 35618 0.74 0.077403
Target:  5'- gGaCAGC-UGCCCGCGGUcccagaacacgaucgACGGGuGCUCg -3'
miRNA:   3'- gC-GUCGuGCGGGCGCCA---------------UGCCC-CGAG- -5'
26418 5' -63.4 NC_005345.2 + 12145 0.74 0.078691
Target:  5'- gGCGGCAUGCCgagggagcUGCGc-ACGGGGCUCg -3'
miRNA:   3'- gCGUCGUGCGG--------GCGCcaUGCCCCGAG- -5'
26418 5' -63.4 NC_005345.2 + 12476 0.74 0.078691
Target:  5'- aGCAGCGCGUCCGUGcGcACGcGGGCg- -3'
miRNA:   3'- gCGUCGUGCGGGCGC-CaUGC-CCCGag -5'
26418 5' -63.4 NC_005345.2 + 11575 0.74 0.083135
Target:  5'- gGCAGCucgacgacggGCGCCuCGCGGUGgcgUGGGGCg- -3'
miRNA:   3'- gCGUCG----------UGCGG-GCGCCAU---GCCCCGag -5'
26418 5' -63.4 NC_005345.2 + 299 0.73 0.100643
Target:  5'- aCGCAGCAcCGcCCCGCcccccggaaGGgGCGGGGCg- -3'
miRNA:   3'- -GCGUCGU-GC-GGGCG---------CCaUGCCCCGag -5'
26418 5' -63.4 NC_005345.2 + 19949 0.72 0.106253
Target:  5'- aGCAGCGCGCCC-CGaa--GGGGCUg -3'
miRNA:   3'- gCGUCGUGCGGGcGCcaugCCCCGAg -5'
26418 5' -63.4 NC_005345.2 + 12781 0.72 0.106253
Target:  5'- gCGgAGCGCGCCCGCG-UACGcGGCg- -3'
miRNA:   3'- -GCgUCGUGCGGGCGCcAUGCcCCGag -5'
26418 5' -63.4 NC_005345.2 + 35753 0.72 0.106253
Target:  5'- gCGCAGgACGaaCCgGCGGgGCGGGGCg- -3'
miRNA:   3'- -GCGUCgUGC--GGgCGCCaUGCCCCGag -5'
26418 5' -63.4 NC_005345.2 + 38372 0.72 0.109167
Target:  5'- cCGCAGCGCGgcuguCUCGaCGGccgGCaGGGGCUCg -3'
miRNA:   3'- -GCGUCGUGC-----GGGC-GCCa--UG-CCCCGAG- -5'
26418 5' -63.4 NC_005345.2 + 6620 0.72 0.109167
Target:  5'- gGCGGCgguuGCGCCCgGCGGUGCGacGGCgUCa -3'
miRNA:   3'- gCGUCG----UGCGGG-CGCCAUGCc-CCG-AG- -5'
26418 5' -63.4 NC_005345.2 + 10639 0.72 0.118364
Target:  5'- aGCAGCACGCgugacucagggaCCGCGGaccgGUGGGGCg- -3'
miRNA:   3'- gCGUCGUGCG------------GGCGCCa---UGCCCCGag -5'
26418 5' -63.4 NC_005345.2 + 27975 0.71 0.121587
Target:  5'- gGCGGUGCGCCguCGaCGG-GCGGGGCgUCg -3'
miRNA:   3'- gCGUCGUGCGG--GC-GCCaUGCCCCG-AG- -5'
26418 5' -63.4 NC_005345.2 + 14904 0.71 0.131752
Target:  5'- aGCAGCGgGCgaagcgggCCGCGGcGCGGcGGCUg -3'
miRNA:   3'- gCGUCGUgCG--------GGCGCCaUGCC-CCGAg -5'
26418 5' -63.4 NC_005345.2 + 35496 0.71 0.133165
Target:  5'- gGCGGCGCGCUgcucgucggcgcucaCGCcgcgccguccGGUuccucGCGGGGCUCg -3'
miRNA:   3'- gCGUCGUGCGG---------------GCG----------CCA-----UGCCCCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.