miRNA display CGI


Results 1 - 20 of 362 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26420 5' -61.6 NC_005345.2 + 48410 0.69 0.223448
Target:  5'- -gAGCACCGCGAgCgGCaCGUCGaCGGCg -3'
miRNA:   3'- agUCGUGGUGCU-GgCG-GCGGCcGUCG- -5'
26420 5' -61.6 NC_005345.2 + 48374 0.74 0.100783
Target:  5'- gUCGGCAUCcc--CCGCCGCCGGCcggGGCu -3'
miRNA:   3'- -AGUCGUGGugcuGGCGGCGGCCG---UCG- -5'
26420 5' -61.6 NC_005345.2 + 48224 0.68 0.293604
Target:  5'- gCGGCcgACCugGACauuggcgaGgCGCCGGCgaAGCa -3'
miRNA:   3'- aGUCG--UGGugCUGg-------CgGCGGCCG--UCG- -5'
26420 5' -61.6 NC_005345.2 + 48006 0.71 0.159419
Target:  5'- -gAGCAgUCACGACCGCCaaCCGGaAGCg -3'
miRNA:   3'- agUCGU-GGUGCUGGCGGc-GGCCgUCG- -5'
26420 5' -61.6 NC_005345.2 + 47812 0.68 0.272908
Target:  5'- -aGGCgcguuACCGCGACC-CgGCCGGCAa- -3'
miRNA:   3'- agUCG-----UGGUGCUGGcGgCGGCCGUcg -5'
26420 5' -61.6 NC_005345.2 + 47706 0.66 0.362932
Target:  5'- cCGGUACgACGACCccguGCCGUCGGacuGGg -3'
miRNA:   3'- aGUCGUGgUGCUGG----CGGCGGCCg--UCg -5'
26420 5' -61.6 NC_005345.2 + 47660 0.67 0.315504
Target:  5'- aUCAGCggguccACCGCgGGCCGCUccgcaucacgGCCGaCGGCa -3'
miRNA:   3'- -AGUCG------UGGUG-CUGGCGG----------CGGCcGUCG- -5'
26420 5' -61.6 NC_005345.2 + 47578 0.67 0.300047
Target:  5'- aCGGCccccacgGCgGCGACUGCCGCCucacGguGCc -3'
miRNA:   3'- aGUCG-------UGgUGCUGGCGGCGGc---CguCG- -5'
26420 5' -61.6 NC_005345.2 + 47156 0.71 0.181819
Target:  5'- -gGGCGCUGUGAgCGCCGCCucGCGGCa -3'
miRNA:   3'- agUCGUGGUGCUgGCGGCGGc-CGUCG- -5'
26420 5' -61.6 NC_005345.2 + 46602 0.68 0.259771
Target:  5'- --cGCGCUggaucGgGGCCGgCGCCGGguGCc -3'
miRNA:   3'- aguCGUGG-----UgCUGGCgGCGGCCguCG- -5'
26420 5' -61.6 NC_005345.2 + 46450 0.66 0.379803
Target:  5'- aUCGGCGCCGcCGACacccacauCGacaaCGCCcGCGGCc -3'
miRNA:   3'- -AGUCGUGGU-GCUG--------GCg---GCGGcCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 46388 0.72 0.135847
Target:  5'- -gAGCAgCCACG-CCGuCCGaaGGCGGCa -3'
miRNA:   3'- agUCGU-GGUGCuGGC-GGCggCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 46366 0.71 0.178991
Target:  5'- cCGGCGCCGacaagccguaccgaGGCCGCCGCgcgUGGCGcGCu -3'
miRNA:   3'- aGUCGUGGUg-------------CUGGCGGCG---GCCGU-CG- -5'
26420 5' -61.6 NC_005345.2 + 46054 0.66 0.368777
Target:  5'- cCGGgGCCcgagggucgaucagGCGGCCgggGCCGCCGG-GGCc -3'
miRNA:   3'- aGUCgUGG--------------UGCUGG---CGGCGGCCgUCG- -5'
26420 5' -61.6 NC_005345.2 + 45987 0.74 0.100783
Target:  5'- cCGGCACCcCGACgagcucgccgaCGCCGUCGGCAcgGCu -3'
miRNA:   3'- aGUCGUGGuGCUG-----------GCGGCGGCCGU--CG- -5'
26420 5' -61.6 NC_005345.2 + 45802 0.67 0.333896
Target:  5'- aCuGCGCgaggucguccgucguCGCGACCGUgacgUGCaCGGCGGCg -3'
miRNA:   3'- aGuCGUG---------------GUGCUGGCG----GCG-GCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 45733 0.68 0.286572
Target:  5'- cCGcCGCCGCGcCCGCCGCCucucuCAGCc -3'
miRNA:   3'- aGUcGUGGUGCuGGCGGCGGcc---GUCG- -5'
26420 5' -61.6 NC_005345.2 + 45484 0.69 0.217832
Target:  5'- cCGGCAaacgaCACGaucccggccGCUGCCGCCgGGCuGCg -3'
miRNA:   3'- aGUCGUg----GUGC---------UGGCGGCGG-CCGuCG- -5'
26420 5' -61.6 NC_005345.2 + 45439 0.84 0.017041
Target:  5'- aUCAGCugCACc-UCGCCGCCGGCGGCc -3'
miRNA:   3'- -AGUCGugGUGcuGGCGGCGGCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 45307 0.69 0.217832
Target:  5'- aUCAGCcggguCCGCa--CGCCGCCGaccucGCAGCg -3'
miRNA:   3'- -AGUCGu----GGUGcugGCGGCGGC-----CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.