miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26421 5' -55.5 NC_005345.2 + 12605 0.66 0.690005
Target:  5'- cGUCG-GCUACGCgcucggccgGGCACggcucgggcaccgggCCUCGGAGc -3'
miRNA:   3'- -CAGCuCGAUGCG---------CCGUG---------------GGAGCUUUc -5'
26421 5' -55.5 NC_005345.2 + 24853 0.66 0.685619
Target:  5'- aUCGAGCgaggcaaagcACGCcgGGuCACCCUUGAccGAGg -3'
miRNA:   3'- cAGCUCGa---------UGCG--CC-GUGGGAGCU--UUC- -5'
26421 5' -55.5 NC_005345.2 + 4911 0.66 0.685619
Target:  5'- -cCGAGCUGCuGCGGCAgCCg------ -3'
miRNA:   3'- caGCUCGAUG-CGCCGUgGGagcuuuc -5'
26421 5' -55.5 NC_005345.2 + 48585 0.66 0.685619
Target:  5'- -aUGAGCU-CGCGGCgggcgaggACCCacgccggcuguUCGGAGGg -3'
miRNA:   3'- caGCUCGAuGCGCCG--------UGGG-----------AGCUUUC- -5'
26421 5' -55.5 NC_005345.2 + 12029 0.66 0.674621
Target:  5'- -cCG-GCUACGUGGC-CCCUgcCGAGc- -3'
miRNA:   3'- caGCuCGAUGCGCCGuGGGA--GCUUuc -5'
26421 5' -55.5 NC_005345.2 + 36631 0.66 0.674621
Target:  5'- -gCGAGCUGCGCGagauCACCCgcguacugCGAc-- -3'
miRNA:   3'- caGCUCGAUGCGCc---GUGGGa-------GCUuuc -5'
26421 5' -55.5 NC_005345.2 + 6660 0.66 0.674621
Target:  5'- -aCGGGCgaACGUGGCGaucUCCUCGAc-- -3'
miRNA:   3'- caGCUCGa-UGCGCCGU---GGGAGCUuuc -5'
26421 5' -55.5 NC_005345.2 + 45015 0.66 0.674621
Target:  5'- -aCGAGCgcCGCGaGCAgCCgCUCGAAc- -3'
miRNA:   3'- caGCUCGauGCGC-CGU-GG-GAGCUUuc -5'
26421 5' -55.5 NC_005345.2 + 4749 0.66 0.66137
Target:  5'- -cCGGGCUcgacucggaccuCGaCGGCACCCUCGccGGc -3'
miRNA:   3'- caGCUCGAu-----------GC-GCCGUGGGAGCuuUC- -5'
26421 5' -55.5 NC_005345.2 + 22167 0.66 0.656943
Target:  5'- -gCGAGCaGCGcCGGCGCugggaucggguucguCCUCGAcGGg -3'
miRNA:   3'- caGCUCGaUGC-GCCGUG---------------GGAGCUuUC- -5'
26421 5' -55.5 NC_005345.2 + 10606 0.66 0.652512
Target:  5'- -aCGAGCagcgGCGCGGCcggucgGCCCgggUCGAGc- -3'
miRNA:   3'- caGCUCGa---UGCGCCG------UGGG---AGCUUuc -5'
26421 5' -55.5 NC_005345.2 + 19943 0.66 0.652512
Target:  5'- -aCGAGCaGCaGC-GCGCCC-CGAAGGg -3'
miRNA:   3'- caGCUCGaUG-CGcCGUGGGaGCUUUC- -5'
26421 5' -55.5 NC_005345.2 + 37511 0.66 0.641424
Target:  5'- -gCGGGCUgcgGCGCGGUGCgCUCGc--- -3'
miRNA:   3'- caGCUCGA---UGCGCCGUGgGAGCuuuc -5'
26421 5' -55.5 NC_005345.2 + 20705 0.66 0.641424
Target:  5'- -cCGAGCagcuCGCGGUacaucucgcgGCCCUCGGc-- -3'
miRNA:   3'- caGCUCGau--GCGCCG----------UGGGAGCUuuc -5'
26421 5' -55.5 NC_005345.2 + 35752 0.66 0.641424
Target:  5'- -aCGAGCg--GCGGCAUCC-CGggGc -3'
miRNA:   3'- caGCUCGaugCGCCGUGGGaGCuuUc -5'
26421 5' -55.5 NC_005345.2 + 9056 0.67 0.634767
Target:  5'- -cCGAGCagGCGCGGCGCCauugcugcccgcggUCGAcGGu -3'
miRNA:   3'- caGCUCGa-UGCGCCGUGGg-------------AGCUuUC- -5'
26421 5' -55.5 NC_005345.2 + 2352 0.67 0.629218
Target:  5'- -gCGuGCUugGCGGCGCagcccggucgcgaCCUCGcgGGc -3'
miRNA:   3'- caGCuCGAugCGCCGUG-------------GGAGCuuUC- -5'
26421 5' -55.5 NC_005345.2 + 30586 0.67 0.619232
Target:  5'- -cCGAcGCUGgGCGcGCACCCggCGAGc- -3'
miRNA:   3'- caGCU-CGAUgCGC-CGUGGGa-GCUUuc -5'
26421 5' -55.5 NC_005345.2 + 29764 0.67 0.608148
Target:  5'- -gCGAcGCUGCuCGGCAcgaccgccgaguCCCUCGAAGa -3'
miRNA:   3'- caGCU-CGAUGcGCCGU------------GGGAGCUUUc -5'
26421 5' -55.5 NC_005345.2 + 30930 0.67 0.608148
Target:  5'- -gCGAGCccgacccgaACGCGGCGCCCcacUCGGc-- -3'
miRNA:   3'- caGCUCGa--------UGCGCCGUGGG---AGCUuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.