Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26422 | 3' | -53.2 | NC_005345.2 | + | 42380 | 1.09 | 0.00132 |
Target: 5'- aCACCGACGGCAUCGCCUACAAGAUCAa -3' miRNA: 3'- -GUGGCUGCCGUAGCGGAUGUUCUAGU- -5' |
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26422 | 3' | -53.2 | NC_005345.2 | + | 35654 | 0.78 | 0.204116 |
Target: 5'- aCACCGAgGGCAUCaagGCCguuugggACAAGGUCGc -3' miRNA: 3'- -GUGGCUgCCGUAG---CGGa------UGUUCUAGU- -5' |
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26422 | 3' | -53.2 | NC_005345.2 | + | 41593 | 0.77 | 0.215528 |
Target: 5'- uCACUGGCGGCGUCGgauaCCUGguCGGGAUCAg -3' miRNA: 3'- -GUGGCUGCCGUAGC----GGAU--GUUCUAGU- -5' |
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26422 | 3' | -53.2 | NC_005345.2 | + | 9774 | 0.77 | 0.227482 |
Target: 5'- aCACCGGCGGCAUCGC--GCAucucGAUCu -3' miRNA: 3'- -GUGGCUGCCGUAGCGgaUGUu---CUAGu -5' |
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26422 | 3' | -53.2 | NC_005345.2 | + | 46169 | 0.76 | 0.253072 |
Target: 5'- cCGCCGACGcUAUCGCCUACAAGu--- -3' miRNA: 3'- -GUGGCUGCcGUAGCGGAUGUUCuagu -5' |
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26422 | 3' | -53.2 | NC_005345.2 | + | 37696 | 0.75 | 0.280983 |
Target: 5'- gGCCGugGGCcgCcaguCCUGCGGGAUCGc -3' miRNA: 3'- gUGGCugCCGuaGc---GGAUGUUCUAGU- -5' |
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26422 | 3' | -53.2 | NC_005345.2 | + | 19050 | 0.75 | 0.295831 |
Target: 5'- uCGCCGcccUGGCcgugGUCGCCUACGGGGUCu -3' miRNA: 3'- -GUGGCu--GCCG----UAGCGGAUGUUCUAGu -5' |
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26422 | 3' | -53.2 | NC_005345.2 | + | 15068 | 0.75 | 0.303481 |
Target: 5'- gCGCCGGCcuGCAgCGCCUGCGuGAUCAg -3' miRNA: 3'- -GUGGCUGc-CGUaGCGGAUGUuCUAGU- -5' |
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26422 | 3' | -53.2 | NC_005345.2 | + | 42571 | 0.74 | 0.344002 |
Target: 5'- cCugCGACagGGgGUCGCCgggcgGCAGGAUCGa -3' miRNA: 3'- -GugGCUG--CCgUAGCGGa----UGUUCUAGU- -5' |
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26422 | 3' | -53.2 | NC_005345.2 | + | 16130 | 0.74 | 0.352559 |
Target: 5'- gGCCGGCGGCGUC-CCgGCGguacAGAUCGc -3' miRNA: 3'- gUGGCUGCCGUAGcGGaUGU----UCUAGU- -5' |
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26422 | 3' | -53.2 | NC_005345.2 | + | 47397 | 0.73 | 0.388272 |
Target: 5'- gGCCGACGGUcaaacGUCGCCUGCcugcccggGGGAUa- -3' miRNA: 3'- gUGGCUGCCG-----UAGCGGAUG--------UUCUAgu -5' |
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26422 | 3' | -53.2 | NC_005345.2 | + | 7928 | 0.73 | 0.397564 |
Target: 5'- gGCCGcACGG-AUCGCUUACcGGAUCGg -3' miRNA: 3'- gUGGC-UGCCgUAGCGGAUGuUCUAGU- -5' |
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26422 | 3' | -53.2 | NC_005345.2 | + | 3151 | 0.73 | 0.406048 |
Target: 5'- uGCCGACGGCGUCGgCgagcucgucggggUGCcGGGUCGg -3' miRNA: 3'- gUGGCUGCCGUAGCgG-------------AUGuUCUAGU- -5' |
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26422 | 3' | -53.2 | NC_005345.2 | + | 39344 | 0.71 | 0.497754 |
Target: 5'- gCACCccuCGGCGUgGCCgugcgcUACGAGAUCGa -3' miRNA: 3'- -GUGGcu-GCCGUAgCGG------AUGUUCUAGU- -5' |
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26422 | 3' | -53.2 | NC_005345.2 | + | 12325 | 0.71 | 0.519163 |
Target: 5'- gCGCCGAuCGGuCGUC-CCUGCAAGAc-- -3' miRNA: 3'- -GUGGCU-GCC-GUAGcGGAUGUUCUagu -5' |
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26422 | 3' | -53.2 | NC_005345.2 | + | 34101 | 0.7 | 0.530005 |
Target: 5'- gCGCCcgcGACGGCGacaUCGCCgccgACGcGAUCAa -3' miRNA: 3'- -GUGG---CUGCCGU---AGCGGa---UGUuCUAGU- -5' |
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26422 | 3' | -53.2 | NC_005345.2 | + | 20223 | 0.7 | 0.530005 |
Target: 5'- cCGCCGcaGC-GCAUCGCCUGCGuggcacGAUCGa -3' miRNA: 3'- -GUGGC--UGcCGUAGCGGAUGUu-----CUAGU- -5' |
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26422 | 3' | -53.2 | NC_005345.2 | + | 35943 | 0.7 | 0.540928 |
Target: 5'- -gUCGGCGGCGUCGUCaugaGCGGGGUUg -3' miRNA: 3'- guGGCUGCCGUAGCGGa---UGUUCUAGu -5' |
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26422 | 3' | -53.2 | NC_005345.2 | + | 3028 | 0.7 | 0.551925 |
Target: 5'- gGgCGGCGGCAgcaugcUCGCUUGCGGGggCGg -3' miRNA: 3'- gUgGCUGCCGU------AGCGGAUGUUCuaGU- -5' |
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26422 | 3' | -53.2 | NC_005345.2 | + | 7750 | 0.7 | 0.562989 |
Target: 5'- gGCuCGACGGCA-CGCCgcUGCAcguGAUCGa -3' miRNA: 3'- gUG-GCUGCCGUaGCGG--AUGUu--CUAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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