miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26422 3' -53.2 NC_005345.2 + 42380 1.09 0.00132
Target:  5'- aCACCGACGGCAUCGCCUACAAGAUCAa -3'
miRNA:   3'- -GUGGCUGCCGUAGCGGAUGUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 23648 0.69 0.619011
Target:  5'- uCGCCGA-GGCGgacggCGCCgacCAGGGUCGc -3'
miRNA:   3'- -GUGGCUgCCGUa----GCGGau-GUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 35754 0.69 0.630291
Target:  5'- gAgCGGCGGCAUC-CCgggGCAGGAcUCGa -3'
miRNA:   3'- gUgGCUGCCGUAGcGGa--UGUUCU-AGU- -5'
26422 3' -53.2 NC_005345.2 + 41849 0.66 0.80316
Target:  5'- gCACCG-CGGC-UCGuCCUGCGGuucgccucggcGAUCGc -3'
miRNA:   3'- -GUGGCuGCCGuAGC-GGAUGUU-----------CUAGU- -5'
26422 3' -53.2 NC_005345.2 + 19050 0.75 0.295831
Target:  5'- uCGCCGcccUGGCcgugGUCGCCUACGGGGUCu -3'
miRNA:   3'- -GUGGCu--GCCG----UAGCGGAUGUUCUAGu -5'
26422 3' -53.2 NC_005345.2 + 7928 0.73 0.397564
Target:  5'- gGCCGcACGG-AUCGCUUACcGGAUCGg -3'
miRNA:   3'- gUGGC-UGCCgUAGCGGAUGuUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 12325 0.71 0.519163
Target:  5'- gCGCCGAuCGGuCGUC-CCUGCAAGAc-- -3'
miRNA:   3'- -GUGGCU-GCC-GUAGcGGAUGUUCUagu -5'
26422 3' -53.2 NC_005345.2 + 34101 0.7 0.530005
Target:  5'- gCGCCcgcGACGGCGacaUCGCCgccgACGcGAUCAa -3'
miRNA:   3'- -GUGG---CUGCCGU---AGCGGa---UGUuCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 7750 0.7 0.562989
Target:  5'- gGCuCGACGGCA-CGCCgcUGCAcguGAUCGa -3'
miRNA:   3'- gUG-GCUGCCGUaGCGG--AUGUu--CUAGU- -5'
26422 3' -53.2 NC_005345.2 + 30180 0.69 0.607744
Target:  5'- gCAUCGACgcguGGCGcucguuccUCGCCgaccACGAGAUCAa -3'
miRNA:   3'- -GUGGCUG----CCGU--------AGCGGa---UGUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 18931 0.7 0.574112
Target:  5'- uCACCGcCGGaugcgcgauCGUCGCCcgGCAGGGUCc -3'
miRNA:   3'- -GUGGCuGCC---------GUAGCGGa-UGUUCUAGu -5'
26422 3' -53.2 NC_005345.2 + 35943 0.7 0.540928
Target:  5'- -gUCGGCGGCGUCGUCaugaGCGGGGUUg -3'
miRNA:   3'- guGGCUGCCGUAGCGGa---UGUUCUAGu -5'
26422 3' -53.2 NC_005345.2 + 35654 0.78 0.204116
Target:  5'- aCACCGAgGGCAUCaagGCCguuugggACAAGGUCGc -3'
miRNA:   3'- -GUGGCUgCCGUAG---CGGa------UGUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 14669 0.69 0.585284
Target:  5'- gGCCgGGCGGCGUCGCCgaUGCcGGGcCGg -3'
miRNA:   3'- gUGG-CUGCCGUAGCGG--AUGuUCUaGU- -5'
26422 3' -53.2 NC_005345.2 + 41593 0.77 0.215528
Target:  5'- uCACUGGCGGCGUCGgauaCCUGguCGGGAUCAg -3'
miRNA:   3'- -GUGGCUGCCGUAGC----GGAU--GUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 20223 0.7 0.530005
Target:  5'- cCGCCGcaGC-GCAUCGCCUGCGuggcacGAUCGa -3'
miRNA:   3'- -GUGGC--UGcCGUAGCGGAUGUu-----CUAGU- -5'
26422 3' -53.2 NC_005345.2 + 43478 0.69 0.606618
Target:  5'- uCACCGAC-GCAcaggugaccucgaUCGCCgcCAAGGUCGc -3'
miRNA:   3'- -GUGGCUGcCGU-------------AGCGGauGUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 32433 0.69 0.619011
Target:  5'- gGCCGACGGCA-CGCuCUACcucGAcaUCAc -3'
miRNA:   3'- gUGGCUGCCGUaGCG-GAUGuu-CU--AGU- -5'
26422 3' -53.2 NC_005345.2 + 46169 0.76 0.253072
Target:  5'- cCGCCGACGcUAUCGCCUACAAGu--- -3'
miRNA:   3'- -GUGGCUGCcGUAGCGGAUGUUCuagu -5'
26422 3' -53.2 NC_005345.2 + 39344 0.71 0.497754
Target:  5'- gCACCccuCGGCGUgGCCgugcgcUACGAGAUCGa -3'
miRNA:   3'- -GUGGcu-GCCGUAgCGG------AUGUUCUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.