miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26422 3' -53.2 NC_005345.2 + 1763 0.67 0.741324
Target:  5'- gAUCGGCGGCuuaCGC--GCGGGGUCAg -3'
miRNA:   3'- gUGGCUGCCGua-GCGgaUGUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 2801 0.67 0.741324
Target:  5'- gCGCCGGCGuGCGcucgaUCGCCUGCuccAGcgCc -3'
miRNA:   3'- -GUGGCUGC-CGU-----AGCGGAUGu--UCuaGu -5'
26422 3' -53.2 NC_005345.2 + 3028 0.7 0.551925
Target:  5'- gGgCGGCGGCAgcaugcUCGCUUGCGGGggCGg -3'
miRNA:   3'- gUgGCUGCCGU------AGCGGAUGUUCuaGU- -5'
26422 3' -53.2 NC_005345.2 + 3151 0.73 0.406048
Target:  5'- uGCCGACGGCGUCGgCgagcucgucggggUGCcGGGUCGg -3'
miRNA:   3'- gUGGCUGCCGUAGCgG-------------AUGuUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 3820 0.68 0.69762
Target:  5'- --aCGACGGuCGUC-CgCUGCGAGGUCGg -3'
miRNA:   3'- gugGCUGCC-GUAGcG-GAUGUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 4294 0.68 0.686496
Target:  5'- cCGCCG-CGGgG-CGCCUcgGAGAUCAa -3'
miRNA:   3'- -GUGGCuGCCgUaGCGGAugUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 4766 0.66 0.797239
Target:  5'- -cUCGACGGCAcccUCGCCgGCGAcccguucgaggugacGAUCGc -3'
miRNA:   3'- guGGCUGCCGU---AGCGGaUGUU---------------CUAGU- -5'
26422 3' -53.2 NC_005345.2 + 5433 0.66 0.772929
Target:  5'- --aCGACGGCGuUCGUau-CGAGGUCGa -3'
miRNA:   3'- gugGCUGCCGU-AGCGgauGUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 6616 0.66 0.771895
Target:  5'- gACCGGCGGCGguugCGCCcgGCGgugcgacGGcGUCAc -3'
miRNA:   3'- gUGGCUGCCGUa---GCGGa-UGU-------UC-UAGU- -5'
26422 3' -53.2 NC_005345.2 + 6782 0.67 0.741324
Target:  5'- uGCCGuCGGUGUCGagCUGCGGGAa-- -3'
miRNA:   3'- gUGGCuGCCGUAGCg-GAUGUUCUagu -5'
26422 3' -53.2 NC_005345.2 + 7264 0.69 0.585284
Target:  5'- aACCGACaaGCGUCGCCgcccGCGcGAUCGc -3'
miRNA:   3'- gUGGCUGc-CGUAGCGGa---UGUuCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 7750 0.7 0.562989
Target:  5'- gGCuCGACGGCA-CGCCgcUGCAcguGAUCGa -3'
miRNA:   3'- gUG-GCUGCCGUaGCGG--AUGUu--CUAGU- -5'
26422 3' -53.2 NC_005345.2 + 7928 0.73 0.397564
Target:  5'- gGCCGcACGG-AUCGCUUACcGGAUCGg -3'
miRNA:   3'- gUGGC-UGCCgUAGCGGAUGuUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 8003 0.66 0.80316
Target:  5'- aACCGGCGGCcgCGgUUucACGAGcUCGa -3'
miRNA:   3'- gUGGCUGCCGuaGCgGA--UGUUCuAGU- -5'
26422 3' -53.2 NC_005345.2 + 8174 0.66 0.76253
Target:  5'- cCGCCGACGccgaggucgaucGCGaaagacgcCGCCUGCAcgAGAUCGg -3'
miRNA:   3'- -GUGGCUGC------------CGUa-------GCGGAUGU--UCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 8632 0.68 0.675318
Target:  5'- -uCCGGCGGCGUCGCagUACAccucggcgccGAUCGu -3'
miRNA:   3'- guGGCUGCCGUAGCGg-AUGUu---------CUAGU- -5'
26422 3' -53.2 NC_005345.2 + 9774 0.77 0.227482
Target:  5'- aCACCGGCGGCAUCGC--GCAucucGAUCu -3'
miRNA:   3'- -GUGGCUGCCGUAGCGgaUGUu---CUAGu -5'
26422 3' -53.2 NC_005345.2 + 10329 0.68 0.675318
Target:  5'- uCACCGAUGuCGUCGCCgucgACGAcgugacGGUCAu -3'
miRNA:   3'- -GUGGCUGCcGUAGCGGa---UGUU------CUAGU- -5'
26422 3' -53.2 NC_005345.2 + 10516 0.66 0.760433
Target:  5'- gGCagGACGGgAUCGCCgaggccgacguCGAGAUCGc -3'
miRNA:   3'- gUGg-CUGCCgUAGCGGau---------GUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 11633 0.66 0.80316
Target:  5'- cCGCCGAgcaGGCAUagaCGCCUGCAcGG-CGg -3'
miRNA:   3'- -GUGGCUg--CCGUA---GCGGAUGUuCUaGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.