miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26422 3' -53.2 NC_005345.2 + 11855 0.66 0.80316
Target:  5'- aCGgCGugGGCAUCGgcCCUGCAcGAc-- -3'
miRNA:   3'- -GUgGCugCCGUAGC--GGAUGUuCUagu -5'
26422 3' -53.2 NC_005345.2 + 12093 0.68 0.675318
Target:  5'- gAUCGACGaCGUCGCCgccgGCcGGAUCc -3'
miRNA:   3'- gUGGCUGCcGUAGCGGa---UGuUCUAGu -5'
26422 3' -53.2 NC_005345.2 + 12325 0.71 0.519163
Target:  5'- gCGCCGAuCGGuCGUC-CCUGCAAGAc-- -3'
miRNA:   3'- -GUGGCU-GCC-GUAGcGGAUGUUCUagu -5'
26422 3' -53.2 NC_005345.2 + 14350 0.66 0.761482
Target:  5'- uCGCCGucaucACGGCGUUGagcagccCCUGCAcGAUCGc -3'
miRNA:   3'- -GUGGC-----UGCCGUAGC-------GGAUGUuCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 14669 0.69 0.585284
Target:  5'- gGCCgGGCGGCGUCGCCgaUGCcGGGcCGg -3'
miRNA:   3'- gUGG-CUGCCGUAGCGG--AUGuUCUaGU- -5'
26422 3' -53.2 NC_005345.2 + 15068 0.75 0.303481
Target:  5'- gCGCCGGCcuGCAgCGCCUGCGuGAUCAg -3'
miRNA:   3'- -GUGGCUGc-CGUaGCGGAUGUuCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 15446 0.68 0.664097
Target:  5'- uCGCCcgcGACGGCcccgagccgcuUCGCCUGCuucGGGUCGa -3'
miRNA:   3'- -GUGG---CUGCCGu----------AGCGGAUGu--UCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 16130 0.74 0.352559
Target:  5'- gGCCGGCGGCGUC-CCgGCGguacAGAUCGc -3'
miRNA:   3'- gUGGCUGCCGUAGcGGaUGU----UCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 16369 0.66 0.793255
Target:  5'- uCGCCG-CGGCGUCGCCgcucUGCGccgccaccaugaGGggCAu -3'
miRNA:   3'- -GUGGCuGCCGUAGCGG----AUGU------------UCuaGU- -5'
26422 3' -53.2 NC_005345.2 + 18237 0.68 0.675318
Target:  5'- cCGCCGGCGGuCGUCaCCggguUGCA-GAUCAg -3'
miRNA:   3'- -GUGGCUGCC-GUAGcGG----AUGUuCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 18931 0.7 0.574112
Target:  5'- uCACCGcCGGaugcgcgauCGUCGCCcgGCAGGGUCc -3'
miRNA:   3'- -GUGGCuGCC---------GUAGCGGa-UGUUCUAGu -5'
26422 3' -53.2 NC_005345.2 + 19050 0.75 0.295831
Target:  5'- uCGCCGcccUGGCcgugGUCGCCUACGGGGUCu -3'
miRNA:   3'- -GUGGCu--GCCG----UAGCGGAUGUUCUAGu -5'
26422 3' -53.2 NC_005345.2 + 19271 0.68 0.671956
Target:  5'- uGCCGACGGCGgcCGCgUGCGuccacagccggaccGGGUCc -3'
miRNA:   3'- gUGGCUGCCGUa-GCGgAUGU--------------UCUAGu -5'
26422 3' -53.2 NC_005345.2 + 19805 0.66 0.76253
Target:  5'- aCGCCGACGGCGacgagCGCUgACAcccGGggCGg -3'
miRNA:   3'- -GUGGCUGCCGUa----GCGGaUGU---UCuaGU- -5'
26422 3' -53.2 NC_005345.2 + 20223 0.7 0.530005
Target:  5'- cCGCCGcaGC-GCAUCGCCUGCGuggcacGAUCGa -3'
miRNA:   3'- -GUGGC--UGcCGUAGCGGAUGUu-----CUAGU- -5'
26422 3' -53.2 NC_005345.2 + 20398 0.66 0.80316
Target:  5'- gACCG-CGGg--CGCCUGCAGGGcCGa -3'
miRNA:   3'- gUGGCuGCCguaGCGGAUGUUCUaGU- -5'
26422 3' -53.2 NC_005345.2 + 23056 0.66 0.783174
Target:  5'- aCACC--CGGUA-CGCCUGC-GGAUCGa -3'
miRNA:   3'- -GUGGcuGCCGUaGCGGAUGuUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 23648 0.69 0.619011
Target:  5'- uCGCCGA-GGCGgacggCGCCgacCAGGGUCGc -3'
miRNA:   3'- -GUGGCUgCCGUa----GCGGau-GUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 23756 0.68 0.686496
Target:  5'- -cUCGACGGCGagGCCgGCGGcGAUCGc -3'
miRNA:   3'- guGGCUGCCGUagCGGaUGUU-CUAGU- -5'
26422 3' -53.2 NC_005345.2 + 24481 0.7 0.562989
Target:  5'- uCAUCGACGGCcgGUCccggGCCcGCGGGAUCc -3'
miRNA:   3'- -GUGGCUGCCG--UAG----CGGaUGUUCUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.