miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26422 3' -53.2 NC_005345.2 + 32433 0.69 0.619011
Target:  5'- gGCCGACGGCA-CGCuCUACcucGAcaUCAc -3'
miRNA:   3'- gUGGCUGCCGUaGCG-GAUGuu-CU--AGU- -5'
26422 3' -53.2 NC_005345.2 + 18931 0.7 0.574112
Target:  5'- uCACCGcCGGaugcgcgauCGUCGCCcgGCAGGGUCc -3'
miRNA:   3'- -GUGGCuGCC---------GUAGCGGa-UGUUCUAGu -5'
26422 3' -53.2 NC_005345.2 + 41142 0.66 0.793255
Target:  5'- gACUGGCGGC-UCGCCacugUGCAGaccGUCAa -3'
miRNA:   3'- gUGGCUGCCGuAGCGG----AUGUUc--UAGU- -5'
26422 3' -53.2 NC_005345.2 + 42473 0.67 0.741324
Target:  5'- aCGCCGA-GGcCGUCGUCgAgGAGAUCGc -3'
miRNA:   3'- -GUGGCUgCC-GUAGCGGaUgUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 35754 0.69 0.630291
Target:  5'- gAgCGGCGGCAUC-CCgggGCAGGAcUCGa -3'
miRNA:   3'- gUgGCUGCCGUAGcGGa--UGUUCU-AGU- -5'
26422 3' -53.2 NC_005345.2 + 24481 0.7 0.562989
Target:  5'- uCAUCGACGGCcgGUCccggGCCcGCGGGAUCc -3'
miRNA:   3'- -GUGGCUGCCG--UAG----CGGaUGUUCUAGu -5'
26422 3' -53.2 NC_005345.2 + 40632 0.67 0.730541
Target:  5'- aGCCG-CGGCAUgGCgaGCAAGGa-- -3'
miRNA:   3'- gUGGCuGCCGUAgCGgaUGUUCUagu -5'
26422 3' -53.2 NC_005345.2 + 7750 0.7 0.562989
Target:  5'- gGCuCGACGGCA-CGCCgcUGCAcguGAUCGa -3'
miRNA:   3'- gUG-GCUGCCGUaGCGG--AUGUu--CUAGU- -5'
26422 3' -53.2 NC_005345.2 + 35943 0.7 0.540928
Target:  5'- -gUCGGCGGCGUCGUCaugaGCGGGGUUg -3'
miRNA:   3'- guGGCUGCCGUAGCGGa---UGUUCUAGu -5'
26422 3' -53.2 NC_005345.2 + 30180 0.69 0.607744
Target:  5'- gCAUCGACgcguGGCGcucguuccUCGCCgaccACGAGAUCAa -3'
miRNA:   3'- -GUGGCUG----CCGU--------AGCGGa---UGUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 12093 0.68 0.675318
Target:  5'- gAUCGACGaCGUCGCCgccgGCcGGAUCc -3'
miRNA:   3'- gUGGCUGCcGUAGCGGa---UGuUCUAGu -5'
26422 3' -53.2 NC_005345.2 + 41849 0.66 0.80316
Target:  5'- gCACCG-CGGC-UCGuCCUGCGGuucgccucggcGAUCGc -3'
miRNA:   3'- -GUGGCuGCCGuAGC-GGAUGUU-----------CUAGU- -5'
26422 3' -53.2 NC_005345.2 + 33484 0.68 0.686496
Target:  5'- gGCCGACGGUgcagGUCGgCgcgGAGAUCGg -3'
miRNA:   3'- gUGGCUGCCG----UAGCgGaugUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 30366 0.67 0.751991
Target:  5'- -cCCGACGGCAgccCGCg-GCGGGcgCAg -3'
miRNA:   3'- guGGCUGCCGUa--GCGgaUGUUCuaGU- -5'
26422 3' -53.2 NC_005345.2 + 6616 0.66 0.771895
Target:  5'- gACCGGCGGCGguugCGCCcgGCGgugcgacGGcGUCAc -3'
miRNA:   3'- gUGGCUGCCGUa---GCGGa-UGU-------UC-UAGU- -5'
26422 3' -53.2 NC_005345.2 + 4766 0.66 0.797239
Target:  5'- -cUCGACGGCAcccUCGCCgGCGAcccguucgaggugacGAUCGc -3'
miRNA:   3'- guGGCUGCCGU---AGCGGaUGUU---------------CUAGU- -5'
26422 3' -53.2 NC_005345.2 + 23648 0.69 0.619011
Target:  5'- uCGCCGA-GGCGgacggCGCCgacCAGGGUCGc -3'
miRNA:   3'- -GUGGCUgCCGUa----GCGGau-GUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 14669 0.69 0.585284
Target:  5'- gGCCgGGCGGCGUCGCCgaUGCcGGGcCGg -3'
miRNA:   3'- gUGG-CUGCCGUAGCGG--AUGuUCUaGU- -5'
26422 3' -53.2 NC_005345.2 + 43478 0.69 0.606618
Target:  5'- uCACCGAC-GCAcaggugaccucgaUCGCCgcCAAGGUCGc -3'
miRNA:   3'- -GUGGCUGcCGU-------------AGCGGauGUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 37696 0.75 0.280983
Target:  5'- gGCCGugGGCcgCcaguCCUGCGGGAUCGc -3'
miRNA:   3'- gUGGCugCCGuaGc---GGAUGUUCUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.