miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26422 3' -53.2 NC_005345.2 + 24481 0.7 0.562989
Target:  5'- uCAUCGACGGCcgGUCccggGCCcGCGGGAUCc -3'
miRNA:   3'- -GUGGCUGCCG--UAG----CGGaUGUUCUAGu -5'
26422 3' -53.2 NC_005345.2 + 27849 0.7 0.569656
Target:  5'- uCACgGGCGGCGUCGCUcgucguacucguCGAGGUCc -3'
miRNA:   3'- -GUGgCUGCCGUAGCGGau----------GUUCUAGu -5'
26422 3' -53.2 NC_005345.2 + 18931 0.7 0.574112
Target:  5'- uCACCGcCGGaugcgcgauCGUCGCCcgGCAGGGUCc -3'
miRNA:   3'- -GUGGCuGCC---------GUAGCGGa-UGUUCUAGu -5'
26422 3' -53.2 NC_005345.2 + 14669 0.69 0.585284
Target:  5'- gGCCgGGCGGCGUCGCCgaUGCcGGGcCGg -3'
miRNA:   3'- gUGG-CUGCCGUAGCGG--AUGuUCUaGU- -5'
26422 3' -53.2 NC_005345.2 + 7264 0.69 0.585284
Target:  5'- aACCGACaaGCGUCGCCgcccGCGcGAUCGc -3'
miRNA:   3'- gUGGCUGc-CGUAGCGGa---UGUuCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 43478 0.69 0.606618
Target:  5'- uCACCGAC-GCAcaggugaccucgaUCGCCgcCAAGGUCGc -3'
miRNA:   3'- -GUGGCUGcCGU-------------AGCGGauGUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 30180 0.69 0.607744
Target:  5'- gCAUCGACgcguGGCGcucguuccUCGCCgaccACGAGAUCAa -3'
miRNA:   3'- -GUGGCUG----CCGU--------AGCGGa---UGUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 23648 0.69 0.619011
Target:  5'- uCGCCGA-GGCGgacggCGCCgacCAGGGUCGc -3'
miRNA:   3'- -GUGGCUgCCGUa----GCGGau-GUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 32433 0.69 0.619011
Target:  5'- gGCCGACGGCA-CGCuCUACcucGAcaUCAc -3'
miRNA:   3'- gUGGCUGCCGUaGCG-GAUGuu-CU--AGU- -5'
26422 3' -53.2 NC_005345.2 + 35754 0.69 0.630291
Target:  5'- gAgCGGCGGCAUC-CCgggGCAGGAcUCGa -3'
miRNA:   3'- gUgGCUGCCGUAGcGGa--UGUUCU-AGU- -5'
26422 3' -53.2 NC_005345.2 + 15446 0.68 0.664097
Target:  5'- uCGCCcgcGACGGCcccgagccgcuUCGCCUGCuucGGGUCGa -3'
miRNA:   3'- -GUGG---CUGCCGu----------AGCGGAUGu--UCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 19271 0.68 0.671956
Target:  5'- uGCCGACGGCGgcCGCgUGCGuccacagccggaccGGGUCc -3'
miRNA:   3'- gUGGCUGCCGUa-GCGgAUGU--------------UCUAGu -5'
26422 3' -53.2 NC_005345.2 + 12093 0.68 0.675318
Target:  5'- gAUCGACGaCGUCGCCgccgGCcGGAUCc -3'
miRNA:   3'- gUGGCUGCcGUAGCGGa---UGuUCUAGu -5'
26422 3' -53.2 NC_005345.2 + 46478 0.68 0.675318
Target:  5'- aCGCCcGCGGCcUCGCCgauCAAG-UCGg -3'
miRNA:   3'- -GUGGcUGCCGuAGCGGau-GUUCuAGU- -5'
26422 3' -53.2 NC_005345.2 + 18237 0.68 0.675318
Target:  5'- cCGCCGGCGGuCGUCaCCggguUGCA-GAUCAg -3'
miRNA:   3'- -GUGGCUGCC-GUAGcGG----AUGUuCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 10329 0.68 0.675318
Target:  5'- uCACCGAUGuCGUCGCCgucgACGAcgugacGGUCAu -3'
miRNA:   3'- -GUGGCUGCcGUAGCGGa---UGUU------CUAGU- -5'
26422 3' -53.2 NC_005345.2 + 8632 0.68 0.675318
Target:  5'- -uCCGGCGGCGUCGCagUACAccucggcgccGAUCGu -3'
miRNA:   3'- guGGCUGCCGUAGCGg-AUGUu---------CUAGU- -5'
26422 3' -53.2 NC_005345.2 + 41446 0.68 0.675318
Target:  5'- gUACCGGCGGCAcUCGCgguCGAGcagcGUCAa -3'
miRNA:   3'- -GUGGCUGCCGU-AGCGgauGUUC----UAGU- -5'
26422 3' -53.2 NC_005345.2 + 23756 0.68 0.686496
Target:  5'- -cUCGACGGCGagGCCgGCGGcGAUCGc -3'
miRNA:   3'- guGGCUGCCGUagCGGaUGUU-CUAGU- -5'
26422 3' -53.2 NC_005345.2 + 4294 0.68 0.686496
Target:  5'- cCGCCG-CGGgG-CGCCUcgGAGAUCAa -3'
miRNA:   3'- -GUGGCuGCCgUaGCGGAugUUCUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.