miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26422 3' -53.2 NC_005345.2 + 1763 0.67 0.741324
Target:  5'- gAUCGGCGGCuuaCGC--GCGGGGUCAg -3'
miRNA:   3'- gUGGCUGCCGua-GCGgaUGUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 45905 0.67 0.741324
Target:  5'- gGCgGACGGUugucacUCGCCUGCcAGAagUCGu -3'
miRNA:   3'- gUGgCUGCCGu-----AGCGGAUGuUCU--AGU- -5'
26422 3' -53.2 NC_005345.2 + 2801 0.67 0.741324
Target:  5'- gCGCCGGCGuGCGcucgaUCGCCUGCuccAGcgCc -3'
miRNA:   3'- -GUGGCUGC-CGU-----AGCGGAUGu--UCuaGu -5'
26422 3' -53.2 NC_005345.2 + 42473 0.67 0.741324
Target:  5'- aCGCCGA-GGcCGUCGUCgAgGAGAUCGc -3'
miRNA:   3'- -GUGGCUgCC-GUAGCGGaUgUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 6782 0.67 0.741324
Target:  5'- uGCCGuCGGUGUCGagCUGCGGGAa-- -3'
miRNA:   3'- gUGGCuGCCGUAGCg-GAUGUUCUagu -5'
26422 3' -53.2 NC_005345.2 + 40632 0.67 0.730541
Target:  5'- aGCCG-CGGCAUgGCgaGCAAGGa-- -3'
miRNA:   3'- gUGGCuGCCGUAgCGgaUGUUCUagu -5'
26422 3' -53.2 NC_005345.2 + 45837 0.67 0.730541
Target:  5'- uGCaCGGCGGCggCGCggGCGAcGAUCGu -3'
miRNA:   3'- gUG-GCUGCCGuaGCGgaUGUU-CUAGU- -5'
26422 3' -53.2 NC_005345.2 + 41716 0.67 0.708676
Target:  5'- uCACCuACcGCAUCGCCUaagACGGGAguUCAc -3'
miRNA:   3'- -GUGGcUGcCGUAGCGGA---UGUUCU--AGU- -5'
26422 3' -53.2 NC_005345.2 + 3820 0.68 0.69762
Target:  5'- --aCGACGGuCGUC-CgCUGCGAGGUCGg -3'
miRNA:   3'- gugGCUGCC-GUAGcG-GAUGUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 4294 0.68 0.686496
Target:  5'- cCGCCG-CGGgG-CGCCUcgGAGAUCAa -3'
miRNA:   3'- -GUGGCuGCCgUaGCGGAugUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 23756 0.68 0.686496
Target:  5'- -cUCGACGGCGagGCCgGCGGcGAUCGc -3'
miRNA:   3'- guGGCUGCCGUagCGGaUGUU-CUAGU- -5'
26422 3' -53.2 NC_005345.2 + 33484 0.68 0.686496
Target:  5'- gGCCGACGGUgcagGUCGgCgcgGAGAUCGg -3'
miRNA:   3'- gUGGCUGCCG----UAGCgGaugUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 18237 0.68 0.675318
Target:  5'- cCGCCGGCGGuCGUCaCCggguUGCA-GAUCAg -3'
miRNA:   3'- -GUGGCUGCC-GUAGcGG----AUGUuCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 46478 0.68 0.675318
Target:  5'- aCGCCcGCGGCcUCGCCgauCAAG-UCGg -3'
miRNA:   3'- -GUGGcUGCCGuAGCGGau-GUUCuAGU- -5'
26422 3' -53.2 NC_005345.2 + 12093 0.68 0.675318
Target:  5'- gAUCGACGaCGUCGCCgccgGCcGGAUCc -3'
miRNA:   3'- gUGGCUGCcGUAGCGGa---UGuUCUAGu -5'
26422 3' -53.2 NC_005345.2 + 10329 0.68 0.675318
Target:  5'- uCACCGAUGuCGUCGCCgucgACGAcgugacGGUCAu -3'
miRNA:   3'- -GUGGCUGCcGUAGCGGa---UGUU------CUAGU- -5'
26422 3' -53.2 NC_005345.2 + 8632 0.68 0.675318
Target:  5'- -uCCGGCGGCGUCGCagUACAccucggcgccGAUCGu -3'
miRNA:   3'- guGGCUGCCGUAGCGg-AUGUu---------CUAGU- -5'
26422 3' -53.2 NC_005345.2 + 41446 0.68 0.675318
Target:  5'- gUACCGGCGGCAcUCGCgguCGAGcagcGUCAa -3'
miRNA:   3'- -GUGGCUGCCGU-AGCGgauGUUC----UAGU- -5'
26422 3' -53.2 NC_005345.2 + 19271 0.68 0.671956
Target:  5'- uGCCGACGGCGgcCGCgUGCGuccacagccggaccGGGUCc -3'
miRNA:   3'- gUGGCUGCCGUa-GCGgAUGU--------------UCUAGu -5'
26422 3' -53.2 NC_005345.2 + 15446 0.68 0.664097
Target:  5'- uCGCCcgcGACGGCcccgagccgcuUCGCCUGCuucGGGUCGa -3'
miRNA:   3'- -GUGG---CUGCCGu----------AGCGGAUGu--UCUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.