miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26422 3' -53.2 NC_005345.2 + 47397 0.73 0.388272
Target:  5'- gGCCGACGGUcaaacGUCGCCUGCcugcccggGGGAUa- -3'
miRNA:   3'- gUGGCUGCCG-----UAGCGGAUG--------UUCUAgu -5'
26422 3' -53.2 NC_005345.2 + 46478 0.68 0.675318
Target:  5'- aCGCCcGCGGCcUCGCCgauCAAG-UCGg -3'
miRNA:   3'- -GUGGcUGCCGuAGCGGau-GUUCuAGU- -5'
26422 3' -53.2 NC_005345.2 + 46169 0.76 0.253072
Target:  5'- cCGCCGACGcUAUCGCCUACAAGu--- -3'
miRNA:   3'- -GUGGCUGCcGUAGCGGAUGUUCuagu -5'
26422 3' -53.2 NC_005345.2 + 45905 0.67 0.741324
Target:  5'- gGCgGACGGUugucacUCGCCUGCcAGAagUCGu -3'
miRNA:   3'- gUGgCUGCCGu-----AGCGGAUGuUCU--AGU- -5'
26422 3' -53.2 NC_005345.2 + 45837 0.67 0.730541
Target:  5'- uGCaCGGCGGCggCGCggGCGAcGAUCGu -3'
miRNA:   3'- gUG-GCUGCCGuaGCGgaUGUU-CUAGU- -5'
26422 3' -53.2 NC_005345.2 + 43478 0.69 0.606618
Target:  5'- uCACCGAC-GCAcaggugaccucgaUCGCCgcCAAGGUCGc -3'
miRNA:   3'- -GUGGCUGcCGU-------------AGCGGauGUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 42571 0.74 0.344002
Target:  5'- cCugCGACagGGgGUCGCCgggcgGCAGGAUCGa -3'
miRNA:   3'- -GugGCUG--CCgUAGCGGa----UGUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 42473 0.67 0.741324
Target:  5'- aCGCCGA-GGcCGUCGUCgAgGAGAUCGc -3'
miRNA:   3'- -GUGGCUgCC-GUAGCGGaUgUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 42380 1.09 0.00132
Target:  5'- aCACCGACGGCAUCGCCUACAAGAUCAa -3'
miRNA:   3'- -GUGGCUGCCGUAGCGGAUGUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 41849 0.66 0.80316
Target:  5'- gCACCG-CGGC-UCGuCCUGCGGuucgccucggcGAUCGc -3'
miRNA:   3'- -GUGGCuGCCGuAGC-GGAUGUU-----------CUAGU- -5'
26422 3' -53.2 NC_005345.2 + 41716 0.67 0.708676
Target:  5'- uCACCuACcGCAUCGCCUaagACGGGAguUCAc -3'
miRNA:   3'- -GUGGcUGcCGUAGCGGA---UGUUCU--AGU- -5'
26422 3' -53.2 NC_005345.2 + 41593 0.77 0.215528
Target:  5'- uCACUGGCGGCGUCGgauaCCUGguCGGGAUCAg -3'
miRNA:   3'- -GUGGCUGCCGUAGC----GGAU--GUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 41446 0.68 0.675318
Target:  5'- gUACCGGCGGCAcUCGCgguCGAGcagcGUCAa -3'
miRNA:   3'- -GUGGCUGCCGU-AGCGgauGUUC----UAGU- -5'
26422 3' -53.2 NC_005345.2 + 41142 0.66 0.793255
Target:  5'- gACUGGCGGC-UCGCCacugUGCAGaccGUCAa -3'
miRNA:   3'- gUGGCUGCCGuAGCGG----AUGUUc--UAGU- -5'
26422 3' -53.2 NC_005345.2 + 40632 0.67 0.730541
Target:  5'- aGCCG-CGGCAUgGCgaGCAAGGa-- -3'
miRNA:   3'- gUGGCuGCCGUAgCGgaUGUUCUagu -5'
26422 3' -53.2 NC_005345.2 + 39344 0.71 0.497754
Target:  5'- gCACCccuCGGCGUgGCCgugcgcUACGAGAUCGa -3'
miRNA:   3'- -GUGGcu-GCCGUAgCGG------AUGUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 37737 0.67 0.741324
Target:  5'- gCGCCGGCuggucGGCGUCGUC---GAGGUCGa -3'
miRNA:   3'- -GUGGCUG-----CCGUAGCGGaugUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 37696 0.75 0.280983
Target:  5'- gGCCGugGGCcgCcaguCCUGCGGGAUCGc -3'
miRNA:   3'- gUGGCugCCGuaGc---GGAUGUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 35943 0.7 0.540928
Target:  5'- -gUCGGCGGCGUCGUCaugaGCGGGGUUg -3'
miRNA:   3'- guGGCUGCCGUAGCGGa---UGUUCUAGu -5'
26422 3' -53.2 NC_005345.2 + 35754 0.69 0.630291
Target:  5'- gAgCGGCGGCAUC-CCgggGCAGGAcUCGa -3'
miRNA:   3'- gUgGCUGCCGUAGcGGa--UGUUCU-AGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.