miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26422 3' -53.2 NC_005345.2 + 15446 0.68 0.664097
Target:  5'- uCGCCcgcGACGGCcccgagccgcuUCGCCUGCuucGGGUCGa -3'
miRNA:   3'- -GUGG---CUGCCGu----------AGCGGAUGu--UCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 1763 0.67 0.741324
Target:  5'- gAUCGGCGGCuuaCGC--GCGGGGUCAg -3'
miRNA:   3'- gUGGCUGCCGua-GCGgaUGUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 45837 0.67 0.730541
Target:  5'- uGCaCGGCGGCggCGCggGCGAcGAUCGu -3'
miRNA:   3'- gUG-GCUGCCGuaGCGgaUGUU-CUAGU- -5'
26422 3' -53.2 NC_005345.2 + 23756 0.68 0.686496
Target:  5'- -cUCGACGGCGagGCCgGCGGcGAUCGc -3'
miRNA:   3'- guGGCUGCCGUagCGGaUGUU-CUAGU- -5'
26422 3' -53.2 NC_005345.2 + 18237 0.68 0.675318
Target:  5'- cCGCCGGCGGuCGUCaCCggguUGCA-GAUCAg -3'
miRNA:   3'- -GUGGCUGCC-GUAGcGG----AUGUuCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 10329 0.68 0.675318
Target:  5'- uCACCGAUGuCGUCGCCgucgACGAcgugacGGUCAu -3'
miRNA:   3'- -GUGGCUGCcGUAGCGGa---UGUU------CUAGU- -5'
26422 3' -53.2 NC_005345.2 + 8632 0.68 0.675318
Target:  5'- -uCCGGCGGCGUCGCagUACAccucggcgccGAUCGu -3'
miRNA:   3'- guGGCUGCCGUAGCGg-AUGUu---------CUAGU- -5'
26422 3' -53.2 NC_005345.2 + 41446 0.68 0.675318
Target:  5'- gUACCGGCGGCAcUCGCgguCGAGcagcGUCAa -3'
miRNA:   3'- -GUGGCUGCCGU-AGCGgauGUUC----UAGU- -5'
26422 3' -53.2 NC_005345.2 + 19271 0.68 0.671956
Target:  5'- uGCCGACGGCGgcCGCgUGCGuccacagccggaccGGGUCc -3'
miRNA:   3'- gUGGCUGCCGUa-GCGgAUGU--------------UCUAGu -5'
26422 3' -53.2 NC_005345.2 + 6782 0.67 0.741324
Target:  5'- uGCCGuCGGUGUCGagCUGCGGGAa-- -3'
miRNA:   3'- gUGGCuGCCGUAGCg-GAUGUUCUagu -5'
26422 3' -53.2 NC_005345.2 + 37737 0.67 0.741324
Target:  5'- gCGCCGGCuggucGGCGUCGUC---GAGGUCGa -3'
miRNA:   3'- -GUGGCUG-----CCGUAGCGGaugUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 45905 0.67 0.741324
Target:  5'- gGCgGACGGUugucacUCGCCUGCcAGAagUCGu -3'
miRNA:   3'- gUGgCUGCCGu-----AGCGGAUGuUCU--AGU- -5'
26422 3' -53.2 NC_005345.2 + 20398 0.66 0.80316
Target:  5'- gACCG-CGGg--CGCCUGCAGGGcCGa -3'
miRNA:   3'- gUGGCuGCCguaGCGGAUGUUCUaGU- -5'
26422 3' -53.2 NC_005345.2 + 11633 0.66 0.80316
Target:  5'- cCGCCGAgcaGGCAUagaCGCCUGCAcGG-CGg -3'
miRNA:   3'- -GUGGCUg--CCGUA---GCGGAUGUuCUaGU- -5'
26422 3' -53.2 NC_005345.2 + 16369 0.66 0.793255
Target:  5'- uCGCCG-CGGCGUCGCCgcucUGCGccgccaccaugaGGggCAu -3'
miRNA:   3'- -GUGGCuGCCGUAGCGG----AUGU------------UCuaGU- -5'
26422 3' -53.2 NC_005345.2 + 5433 0.66 0.772929
Target:  5'- --aCGACGGCGuUCGUau-CGAGGUCGa -3'
miRNA:   3'- gugGCUGCCGU-AGCGgauGUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 8174 0.66 0.76253
Target:  5'- cCGCCGACGccgaggucgaucGCGaaagacgcCGCCUGCAcgAGAUCGg -3'
miRNA:   3'- -GUGGCUGC------------CGUa-------GCGGAUGU--UCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 14350 0.66 0.761482
Target:  5'- uCGCCGucaucACGGCGUUGagcagccCCUGCAcGAUCGc -3'
miRNA:   3'- -GUGGC-----UGCCGUAGC-------GGAUGUuCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 30136 0.67 0.751991
Target:  5'- -cCCGAgGGCGgcgCGCCacccguCGAGGUCGu -3'
miRNA:   3'- guGGCUgCCGUa--GCGGau----GUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 2801 0.67 0.741324
Target:  5'- gCGCCGGCGuGCGcucgaUCGCCUGCuccAGcgCc -3'
miRNA:   3'- -GUGGCUGC-CGU-----AGCGGAUGu--UCuaGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.