miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26422 5' -57.8 NC_005345.2 + 43501 0.66 0.544079
Target:  5'- --gGGCC-CGCCgGGCGGU--GCCGAUc -3'
miRNA:   3'- ucaCUGGaGUGG-CCGCCGuaUGGCUA- -5'
26422 5' -57.8 NC_005345.2 + 23752 0.66 0.544079
Target:  5'- --cGGCCUCgacggcgagGCCGGCGGCGaucgcgucgaGCCGGc -3'
miRNA:   3'- ucaCUGGAG---------UGGCCGCCGUa---------UGGCUa -5'
26422 5' -57.8 NC_005345.2 + 28591 0.66 0.522804
Target:  5'- uGUGACCgaccgcaCACCGaauCGcGCAUGCCGGg -3'
miRNA:   3'- uCACUGGa------GUGGCc--GC-CGUAUGGCUa -5'
26422 5' -57.8 NC_005345.2 + 13038 0.66 0.521748
Target:  5'- cGGcGACCggaUCACCGGCagcGGCAUcguguggACCGGa -3'
miRNA:   3'- -UCaCUGG---AGUGGCCG---CCGUA-------UGGCUa -5'
26422 5' -57.8 NC_005345.2 + 44773 0.66 0.512286
Target:  5'- cGGUGACCgacaccccCACCGaGCGGCccGCCc-- -3'
miRNA:   3'- -UCACUGGa-------GUGGC-CGCCGuaUGGcua -5'
26422 5' -57.8 NC_005345.2 + 27851 0.66 0.512286
Target:  5'- uGUGGCCgaUCcUCGGCGGCGcccCCGAc -3'
miRNA:   3'- uCACUGG--AGuGGCCGCCGUau-GGCUa -5'
26422 5' -57.8 NC_005345.2 + 41584 0.66 0.512286
Target:  5'- uGUG-CCgaaUCACUGGCGGCGU-CgGAUa -3'
miRNA:   3'- uCACuGG---AGUGGCCGCCGUAuGgCUA- -5'
26422 5' -57.8 NC_005345.2 + 1657 0.66 0.501856
Target:  5'- gGGUGACCguguuuCCaGCGGCGUcguacgGCCGGa -3'
miRNA:   3'- -UCACUGGagu---GGcCGCCGUA------UGGCUa -5'
26422 5' -57.8 NC_005345.2 + 14650 0.66 0.501856
Target:  5'- --cGACCgcguccucggCACCggccgGGCGGCGUcGCCGAUg -3'
miRNA:   3'- ucaCUGGa---------GUGG-----CCGCCGUA-UGGCUA- -5'
26422 5' -57.8 NC_005345.2 + 35866 0.66 0.501856
Target:  5'- ---aACCgCACCGGCGaGC-UGCCGGUg -3'
miRNA:   3'- ucacUGGaGUGGCCGC-CGuAUGGCUA- -5'
26422 5' -57.8 NC_005345.2 + 3960 0.66 0.491521
Target:  5'- ---aGCCUCuCgGGCGGCAUACuCGGc -3'
miRNA:   3'- ucacUGGAGuGgCCGCCGUAUG-GCUa -5'
26422 5' -57.8 NC_005345.2 + 34133 0.66 0.491521
Target:  5'- gGGUGGCCagagaucgagUgGCgCGGCGGCGgccCCGAg -3'
miRNA:   3'- -UCACUGG----------AgUG-GCCGCCGUau-GGCUa -5'
26422 5' -57.8 NC_005345.2 + 25706 0.66 0.491521
Target:  5'- cGUGACCgguCCGGaCGGCGaacCCGAc -3'
miRNA:   3'- uCACUGGaguGGCC-GCCGUau-GGCUa -5'
26422 5' -57.8 NC_005345.2 + 5394 0.67 0.471154
Target:  5'- gAGUccaCUCAggcCCGGCGGUcgGCCGAg -3'
miRNA:   3'- -UCAcugGAGU---GGCCGCCGuaUGGCUa -5'
26422 5' -57.8 NC_005345.2 + 13453 0.67 0.471154
Target:  5'- cGGcGACgUCGCCGaCGGCGUGCUGu- -3'
miRNA:   3'- -UCaCUGgAGUGGCcGCCGUAUGGCua -5'
26422 5' -57.8 NC_005345.2 + 42511 0.67 0.471154
Target:  5'- cGUGcCCUCuCCGcGCGGCucggcACCGAc -3'
miRNA:   3'- uCACuGGAGuGGC-CGCCGua---UGGCUa -5'
26422 5' -57.8 NC_005345.2 + 19006 0.67 0.471154
Target:  5'- --cGACCUCgACgGGUGGCGcGCCGc- -3'
miRNA:   3'- ucaCUGGAG-UGgCCGCCGUaUGGCua -5'
26422 5' -57.8 NC_005345.2 + 32502 0.67 0.471154
Target:  5'- cGGUGccgucCCUCuGCCGGCGGgCGgcCCGAUc -3'
miRNA:   3'- -UCACu----GGAG-UGGCCGCC-GUauGGCUA- -5'
26422 5' -57.8 NC_005345.2 + 42751 0.67 0.471154
Target:  5'- --gGACCggCAcCCGGCGGU-UGCCGGg -3'
miRNA:   3'- ucaCUGGa-GU-GGCCGCCGuAUGGCUa -5'
26422 5' -57.8 NC_005345.2 + 30918 0.67 0.461132
Target:  5'- cGGUGACgacCGCCGGCGGCcgcucacgGUGCaCGGc -3'
miRNA:   3'- -UCACUGga-GUGGCCGCCG--------UAUG-GCUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.