miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26424 3' -56.1 NC_005345.2 + 47853 0.67 0.619446
Target:  5'- aUGUCaggUGGGcAugGGCC-CGGCGACg -3'
miRNA:   3'- -ACAGgg-ACUC-UugCUGGuGCCGCUGg -5'
26424 3' -56.1 NC_005345.2 + 46116 0.67 0.60854
Target:  5'- cGaCCCUGucGGGGuCGAa-GCGGCGGCCu -3'
miRNA:   3'- aCaGGGAC--UCUU-GCUggUGCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 46055 0.68 0.533232
Target:  5'- cGgggCCC-GAGGGuCGAUCA-GGCGGCCg -3'
miRNA:   3'- aCa--GGGaCUCUU-GCUGGUgCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 45821 0.66 0.684769
Target:  5'- cGUCgCgaccguGACGugCACGGCGGCg -3'
miRNA:   3'- aCAGgGacuc--UUGCugGUGCCGCUGg -5'
26424 3' -56.1 NC_005345.2 + 45706 0.66 0.673945
Target:  5'- gGUCCCggcgggcgGGGGucuGCGugCGCaGCGuCCa -3'
miRNA:   3'- aCAGGGa-------CUCU---UGCugGUGcCGCuGG- -5'
26424 3' -56.1 NC_005345.2 + 45201 0.72 0.343497
Target:  5'- cG-CCC-GAGAGgcugcCGGCCGCGGCGAgCa -3'
miRNA:   3'- aCaGGGaCUCUU-----GCUGGUGCCGCUgG- -5'
26424 3' -56.1 NC_005345.2 + 44857 0.69 0.471457
Target:  5'- -aUCUCcGAG-GCGccCCGCGGCGGCCg -3'
miRNA:   3'- acAGGGaCUCuUGCu-GGUGCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 44327 0.69 0.491672
Target:  5'- --aUCCUGuGGGCcGCCACGGUGcCCg -3'
miRNA:   3'- acaGGGACuCUUGcUGGUGCCGCuGG- -5'
26424 3' -56.1 NC_005345.2 + 43781 0.66 0.684769
Target:  5'- cUGUUCCggcuccugGAGAucgccgggcagcGCGcCCACGGC-ACCg -3'
miRNA:   3'- -ACAGGGa-------CUCU------------UGCuGGUGCCGcUGG- -5'
26424 3' -56.1 NC_005345.2 + 43211 1.11 0.000632
Target:  5'- cUGUCCCUGAGAACGACCACGGCGACCc -3'
miRNA:   3'- -ACAGGGACUCUUGCUGGUGCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 43119 0.68 0.543824
Target:  5'- cGUCCCgGAccGGugGcCCaACGGcCGGCCg -3'
miRNA:   3'- aCAGGGaCU--CUugCuGG-UGCC-GCUGG- -5'
26424 3' -56.1 NC_005345.2 + 42682 0.67 0.627086
Target:  5'- cGUgCCUGAccuguggaugccggGcGCGACCcggcuggauauCGGCGACCa -3'
miRNA:   3'- aCAgGGACU--------------CuUGCUGGu----------GCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 41514 0.74 0.248819
Target:  5'- cGUCCCgaacgcgGAGcGCGAgCGucuCGGCGACCu -3'
miRNA:   3'- aCAGGGa------CUCuUGCUgGU---GCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 41020 0.68 0.533232
Target:  5'- cGgCCaaGAGccguCGACgACGGCGGCCg -3'
miRNA:   3'- aCaGGgaCUCuu--GCUGgUGCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 40863 0.66 0.65219
Target:  5'- cGUgCagGAGGGCGGCCGCuuCGACCg -3'
miRNA:   3'- aCAgGgaCUCUUGCUGGUGccGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 40808 0.69 0.481513
Target:  5'- gUGUCCCaguggcacGGGAACGGgggguguuCGGCGACCa -3'
miRNA:   3'- -ACAGGGa-------CUCUUGCUggu-----GCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 40243 0.7 0.441951
Target:  5'- aGUUCCggaucGAG-ACGAUCgACGGCGACg -3'
miRNA:   3'- aCAGGGa----CUCuUGCUGG-UGCCGCUGg -5'
26424 3' -56.1 NC_005345.2 + 40223 0.66 0.663082
Target:  5'- cG-CCCacGGGGGCGGCCGCcGUGAUCc -3'
miRNA:   3'- aCaGGGa-CUCUUGCUGGUGcCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 38511 0.74 0.255918
Target:  5'- gGUCCCUGAGucacgcgugcugcuCGACC-CGGgcCGACCg -3'
miRNA:   3'- aCAGGGACUCuu------------GCUGGuGCC--GCUGG- -5'
26424 3' -56.1 NC_005345.2 + 38487 0.77 0.173936
Target:  5'- --aCCCUGAucggcucgccgacccGGGCGACCAUGGCGAgCCc -3'
miRNA:   3'- acaGGGACU---------------CUUGCUGGUGCCGCU-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.