miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26424 5' -56.7 NC_005345.2 + 48367 0.72 0.27466
Target:  5'- gGGCCCGgucggCAUCccccgccGCCGGCCGGGGc -3'
miRNA:   3'- aCCGGGCguaa-GUAG-------UGGCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 48199 0.67 0.525728
Target:  5'- cGGCCgGCGUauccCGUUcaacccggcgGCCGACCuGGAc -3'
miRNA:   3'- aCCGGgCGUAa---GUAG----------UGGCUGGuCCU- -5'
26424 5' -56.7 NC_005345.2 + 48057 0.7 0.35257
Target:  5'- cGGCgCGCAccgcUCGUCGCCGuCgAGGGg -3'
miRNA:   3'- aCCGgGCGUa---AGUAGUGGCuGgUCCU- -5'
26424 5' -56.7 NC_005345.2 + 47104 0.66 0.579656
Target:  5'- cGGCCCGCcgggCcgCGCCgGGCCcgcucgacgAGGAc -3'
miRNA:   3'- aCCGGGCGuaa-GuaGUGG-CUGG---------UCCU- -5'
26424 5' -56.7 NC_005345.2 + 47024 0.69 0.423625
Target:  5'- aGGCCUGCuUUCAcugcggcgccgucUCGacgacgcugaccCCGGCCGGGAc -3'
miRNA:   3'- aCCGGGCGuAAGU-------------AGU------------GGCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 46781 0.7 0.344199
Target:  5'- gGGCCCGCGag-GUCG-CGACCGGGc -3'
miRNA:   3'- aCCGGGCGUaagUAGUgGCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 46417 0.73 0.248485
Target:  5'- cGGgCCGCugUCAUCGCCGGgCGGGc -3'
miRNA:   3'- aCCgGGCGuaAGUAGUGGCUgGUCCu -5'
26424 5' -56.7 NC_005345.2 + 46057 0.67 0.53638
Target:  5'- gGGCCCGagggUCgAUCAggCGGCCGGGGc -3'
miRNA:   3'- aCCGGGCgua-AG-UAGUg-GCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 45379 0.72 0.261641
Target:  5'- gGGUCCGCGUUCAccUCGgCCGuCCAGcGGa -3'
miRNA:   3'- aCCGGGCGUAAGU--AGU-GGCuGGUC-CU- -5'
26424 5' -56.7 NC_005345.2 + 45314 0.67 0.557899
Target:  5'- gGGUCCGCA--CGcCGCCGACCucgcagcGGAc -3'
miRNA:   3'- aCCGGGCGUaaGUaGUGGCUGGu------CCU- -5'
26424 5' -56.7 NC_005345.2 + 44522 0.68 0.463723
Target:  5'- cGaUCCGCGUUCAgcaGCuCGACCAGGu -3'
miRNA:   3'- aCcGGGCGUAAGUag-UG-GCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 43913 0.71 0.30451
Target:  5'- cGGCgCGCAgcgCGUCGgCGAUCAGGc -3'
miRNA:   3'- aCCGgGCGUaa-GUAGUgGCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 43501 0.7 0.35257
Target:  5'- gGGCCCGCcgggCggUGCCGAUCGGGu -3'
miRNA:   3'- aCCGGGCGuaa-GuaGUGGCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 43245 1.09 0.000592
Target:  5'- gUGGCCCGCAUUCAUCACCGACCAGGAg -3'
miRNA:   3'- -ACCGGGCGUAAGUAGUGGCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 42108 0.67 0.525728
Target:  5'- cGGgCCGCc-UCgAUCGCCGGCCGGu- -3'
miRNA:   3'- aCCgGGCGuaAG-UAGUGGCUGGUCcu -5'
26424 5' -56.7 NC_005345.2 + 38126 0.73 0.248485
Target:  5'- gGGCCC-----CGUCAUCGACCGGGAa -3'
miRNA:   3'- aCCGGGcguaaGUAGUGGCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 37773 0.66 0.568751
Target:  5'- -cGCCCGCAggCggC-CgCGACCGGGGc -3'
miRNA:   3'- acCGGGCGUaaGuaGuG-GCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 37604 0.68 0.473802
Target:  5'- cGGCUCGCGUUgcgaGUCGgCGACCGaGAg -3'
miRNA:   3'- aCCGGGCGUAAg---UAGUgGCUGGUcCU- -5'
26424 5' -56.7 NC_005345.2 + 37016 0.66 0.568751
Target:  5'- cGGCaugCCGCcuUUCAgcggCACCGggcgaGCCGGGAu -3'
miRNA:   3'- aCCG---GGCGu-AAGUa---GUGGC-----UGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 34596 0.66 0.601587
Target:  5'- gGGCCCGUg--CcgUACCGgGCgAGGAg -3'
miRNA:   3'- aCCGGGCGuaaGuaGUGGC-UGgUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.