Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26424 | 5' | -56.7 | NC_005345.2 | + | 7607 | 0.68 | 0.473802 |
Target: 5'- aGGCCgGUGUcggagcaCAUCGCCGACCcGGc -3' miRNA: 3'- aCCGGgCGUAa------GUAGUGGCUGGuCCu -5' |
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26424 | 5' | -56.7 | NC_005345.2 | + | 25201 | 0.67 | 0.557899 |
Target: 5'- -aGCCCGCGgugaaUCAccCGCCGGCCGGu- -3' miRNA: 3'- acCGGGCGUa----AGUa-GUGGCUGGUCcu -5' |
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26424 | 5' | -56.7 | NC_005345.2 | + | 45314 | 0.67 | 0.557899 |
Target: 5'- gGGUCCGCA--CGcCGCCGACCucgcagcGGAc -3' miRNA: 3'- aCCGGGCGUaaGUaGUGGCUGGu------CCU- -5' |
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26424 | 5' | -56.7 | NC_005345.2 | + | 19743 | 0.67 | 0.547105 |
Target: 5'- cGGCgUCGCugucgCGUgCACCGACCAGa- -3' miRNA: 3'- aCCG-GGCGuaa--GUA-GUGGCUGGUCcu -5' |
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26424 | 5' | -56.7 | NC_005345.2 | + | 19277 | 0.67 | 0.547105 |
Target: 5'- cGGCggCCGCGUgCGUCcacaGCCGgACCGGGu -3' miRNA: 3'- aCCG--GGCGUAaGUAG----UGGC-UGGUCCu -5' |
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26424 | 5' | -56.7 | NC_005345.2 | + | 32893 | 0.67 | 0.547105 |
Target: 5'- cGGCCCGCAggCugggggCGCugcgggccgguCGAUCAGGGg -3' miRNA: 3'- aCCGGGCGUaaGua----GUG-----------GCUGGUCCU- -5' |
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26424 | 5' | -56.7 | NC_005345.2 | + | 46057 | 0.67 | 0.53638 |
Target: 5'- gGGCCCGagggUCgAUCAggCGGCCGGGGc -3' miRNA: 3'- aCCGGGCgua-AG-UAGUg-GCUGGUCCU- -5' |
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26424 | 5' | -56.7 | NC_005345.2 | + | 42108 | 0.67 | 0.525728 |
Target: 5'- cGGgCCGCc-UCgAUCGCCGGCCGGu- -3' miRNA: 3'- aCCgGGCGuaAG-UAGUGGCUGGUCcu -5' |
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26424 | 5' | -56.7 | NC_005345.2 | + | 48199 | 0.67 | 0.525728 |
Target: 5'- cGGCCgGCGUauccCGUUcaacccggcgGCCGACCuGGAc -3' miRNA: 3'- aCCGGgCGUAa---GUAG----------UGGCUGGuCCU- -5' |
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26424 | 5' | -56.7 | NC_005345.2 | + | 23766 | 0.66 | 0.568751 |
Target: 5'- aGGCCgGCGgcgaucgCGUCgaGCCGgcacugccacGCCAGGAc -3' miRNA: 3'- aCCGGgCGUaa-----GUAG--UGGC----------UGGUCCU- -5' |
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26424 | 5' | -56.7 | NC_005345.2 | + | 37016 | 0.66 | 0.568751 |
Target: 5'- cGGCaugCCGCcuUUCAgcggCACCGggcgaGCCGGGAu -3' miRNA: 3'- aCCG---GGCGu-AAGUa---GUGGC-----UGGUCCU- -5' |
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26424 | 5' | -56.7 | NC_005345.2 | + | 17877 | 0.66 | 0.568751 |
Target: 5'- gGGUCCGCcgUggcguaGUCGCCGAUCAcGGc -3' miRNA: 3'- aCCGGGCGuaAg-----UAGUGGCUGGU-CCu -5' |
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26424 | 5' | -56.7 | NC_005345.2 | + | 33482 | 0.66 | 0.612597 |
Target: 5'- gGGCCCGgug-UGUCACC-ACCGGGc -3' miRNA: 3'- aCCGGGCguaaGUAGUGGcUGGUCCu -5' |
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26424 | 5' | -56.7 | NC_005345.2 | + | 11808 | 0.66 | 0.610393 |
Target: 5'- aGGCUCGCuccgagacgggUCAUCGCCGucugCAGGu -3' miRNA: 3'- aCCGGGCGua---------AGUAGUGGCug--GUCCu -5' |
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26424 | 5' | -56.7 | NC_005345.2 | + | 34596 | 0.66 | 0.601587 |
Target: 5'- gGGCCCGUg--CcgUACCGgGCgAGGAg -3' miRNA: 3'- aCCGGGCGuaaGuaGUGGC-UGgUCCU- -5' |
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26424 | 5' | -56.7 | NC_005345.2 | + | 30072 | 0.66 | 0.598289 |
Target: 5'- cGGCCCGCAcgaucgCGUagACCccguaggcgaccacGGCCAGGGc -3' miRNA: 3'- aCCGGGCGUaa----GUAg-UGG--------------CUGGUCCU- -5' |
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26424 | 5' | -56.7 | NC_005345.2 | + | 776 | 0.66 | 0.58403 |
Target: 5'- cGGCCgGCGgcgggggauGCCGACCGGGc -3' miRNA: 3'- aCCGGgCGUaaguag---UGGCUGGUCCu -5' |
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26424 | 5' | -56.7 | NC_005345.2 | + | 47104 | 0.66 | 0.579656 |
Target: 5'- cGGCCCGCcgggCcgCGCCgGGCCcgcucgacgAGGAc -3' miRNA: 3'- aCCGGGCGuaa-GuaGUGG-CUGG---------UCCU- -5' |
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26424 | 5' | -56.7 | NC_005345.2 | + | 10646 | 0.66 | 0.576379 |
Target: 5'- gGGCUCGCcaUgGUCgcccgggucggcgaGCCGAUCAGGGu -3' miRNA: 3'- aCCGGGCGuaAgUAG--------------UGGCUGGUCCU- -5' |
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26424 | 5' | -56.7 | NC_005345.2 | + | 37773 | 0.66 | 0.568751 |
Target: 5'- -cGCCCGCAggCggC-CgCGACCGGGGc -3' miRNA: 3'- acCGGGCGUaaGuaGuG-GCUGGUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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