miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26425 5' -62.3 NC_005345.2 + 46081 0.66 0.370307
Target:  5'- cGGGGcCGCCGGGgccuGCGCGgacaUCCACGc -3'
miRNA:   3'- cCUCUaGCGGCCCgu--CGCGC----GGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 19436 0.66 0.362036
Target:  5'- --cGGUCGCaccgggcuCGGGCAGCaGCGCgaUCGCGu -3'
miRNA:   3'- ccuCUAGCG--------GCCCGUCG-CGCG--GGUGC- -5'
26425 5' -62.3 NC_005345.2 + 19153 0.66 0.353895
Target:  5'- cGGGAcgucgUCGCCGGGCccguacGGC-UGCCCGuCGa -3'
miRNA:   3'- cCUCU-----AGCGGCCCG------UCGcGCGGGU-GC- -5'
26425 5' -62.3 NC_005345.2 + 42946 0.66 0.353895
Target:  5'- gGGAGGUgGCCaGGGCGcCGCGgaaCgCGCGg -3'
miRNA:   3'- -CCUCUAgCGG-CCCGUcGCGCg--G-GUGC- -5'
26425 5' -62.3 NC_005345.2 + 33185 0.66 0.353895
Target:  5'- ---cAUCGCCaacuGGCAGCGCGCgaACGa -3'
miRNA:   3'- ccucUAGCGGc---CCGUCGCGCGggUGC- -5'
26425 5' -62.3 NC_005345.2 + 38457 0.66 0.353088
Target:  5'- aGGAcag-GCCGGGCacAGCGCGggcacuuCCCGCGc -3'
miRNA:   3'- -CCUcuagCGGCCCG--UCGCGC-------GGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 11567 0.66 0.345883
Target:  5'- ---cAUCGCCcGGCAGCucgacgacggGCGCCuCGCGg -3'
miRNA:   3'- ccucUAGCGGcCCGUCG----------CGCGG-GUGC- -5'
26425 5' -62.3 NC_005345.2 + 30918 0.66 0.345883
Target:  5'- cGGuGAcgacCGCC-GGCGGC-CGCUCACGg -3'
miRNA:   3'- -CCuCUa---GCGGcCCGUCGcGCGGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 3166 0.66 0.345883
Target:  5'- cGAGcUCGUCGGGguGCcGgGUCgGCGa -3'
miRNA:   3'- cCUCuAGCGGCCCguCG-CgCGGgUGC- -5'
26425 5' -62.3 NC_005345.2 + 3998 0.66 0.345883
Target:  5'- --cGGUCGgaCGagccGCAGCGCGUCCGCGu -3'
miRNA:   3'- ccuCUAGCg-GCc---CGUCGCGCGGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 5634 0.66 0.345089
Target:  5'- cGGuGAUCGCCGacccgaucGGCaccgcccGGCGgGCCCGg- -3'
miRNA:   3'- -CCuCUAGCGGC--------CCG-------UCGCgCGGGUgc -5'
26425 5' -62.3 NC_005345.2 + 1168 0.66 0.338003
Target:  5'- aGGGGAgcgugCGCggcgcacaCGGGCGGCucgGCaguccgGCCCGCGg -3'
miRNA:   3'- -CCUCUa----GCG--------GCCCGUCG---CG------CGGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 45715 0.66 0.338003
Target:  5'- cGGGGcccgcAUCGCCGcccGCcGcCGCGCCCGCc -3'
miRNA:   3'- -CCUC-----UAGCGGCc--CGuC-GCGCGGGUGc -5'
26425 5' -62.3 NC_005345.2 + 11510 0.66 0.338003
Target:  5'- --cGA-CGCCGGacuGCAGC-CGCUCACGa -3'
miRNA:   3'- ccuCUaGCGGCC---CGUCGcGCGGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 37981 0.66 0.338003
Target:  5'- cGGAccugCGCCGGGguGC-CGCCgUACa -3'
miRNA:   3'- -CCUcua-GCGGCCCguCGcGCGG-GUGc -5'
26425 5' -62.3 NC_005345.2 + 31297 0.66 0.330253
Target:  5'- cGAGGauuccCGCCGGGCGcugcuGCGCGgUCugGa -3'
miRNA:   3'- cCUCUa----GCGGCCCGU-----CGCGCgGGugC- -5'
26425 5' -62.3 NC_005345.2 + 32788 0.66 0.329486
Target:  5'- cGGcGA-CGCCGcGGCgaugcucGGCGCGuUCCGCGa -3'
miRNA:   3'- -CCuCUaGCGGC-CCG-------UCGCGC-GGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 19266 0.67 0.322636
Target:  5'- cGGGAU-GCCGacGGCGGCcgcguGCGUCCACa -3'
miRNA:   3'- cCUCUAgCGGC--CCGUCG-----CGCGGGUGc -5'
26425 5' -62.3 NC_005345.2 + 31458 0.67 0.322636
Target:  5'- cGAGG-CGCCGGGguGCGgGUgUgagGCGg -3'
miRNA:   3'- cCUCUaGCGGCCCguCGCgCGgG---UGC- -5'
26425 5' -62.3 NC_005345.2 + 27955 0.67 0.322636
Target:  5'- cGGAGcgCGugaacCCGaacGGCGGUGCGCCguCGa -3'
miRNA:   3'- -CCUCuaGC-----GGC---CCGUCGCGCGGguGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.