miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26425 5' -62.3 NC_005345.2 + 30497 0.67 0.293485
Target:  5'- uGAGGcUGCCGGaCAGCGa-CCCGCGg -3'
miRNA:   3'- cCUCUaGCGGCCcGUCGCgcGGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 19266 0.67 0.322636
Target:  5'- cGGGAU-GCCGacGGCGGCcgcguGCGUCCACa -3'
miRNA:   3'- cCUCUAgCGGC--CCGUCG-----CGCGGGUGc -5'
26425 5' -62.3 NC_005345.2 + 37502 0.67 0.320376
Target:  5'- -----cCGCCGGGCgcgggcugcggcgcGGUGCGCUCGCu -3'
miRNA:   3'- ccucuaGCGGCCCG--------------UCGCGCGGGUGc -5'
26425 5' -62.3 NC_005345.2 + 27574 0.67 0.307797
Target:  5'- gGGGGGcCGUCGGGCcgucuCGCGCCaACGu -3'
miRNA:   3'- -CCUCUaGCGGCCCGuc---GCGCGGgUGC- -5'
26425 5' -62.3 NC_005345.2 + 36364 0.67 0.307797
Target:  5'- gGGcGGGUCGUugCGGGUGGUccacGCGCgCCACGu -3'
miRNA:   3'- -CC-UCUAGCG--GCCCGUCG----CGCG-GGUGC- -5'
26425 5' -62.3 NC_005345.2 + 18023 0.67 0.307797
Target:  5'- -cGGA-CGCCGGGCgAGCgcaggaacGCGgCCACGu -3'
miRNA:   3'- ccUCUaGCGGCCCG-UCG--------CGCgGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 24627 0.67 0.303448
Target:  5'- cGGuG-UCGCCGGGCGccuCGCGguggucgaccaggauCCCGCGg -3'
miRNA:   3'- -CCuCuAGCGGCCCGUc--GCGC---------------GGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 34141 0.67 0.300575
Target:  5'- aGAGAUCGaguggCGcGGCGGCG-GCCC-CGa -3'
miRNA:   3'- cCUCUAGCg----GC-CCGUCGCgCGGGuGC- -5'
26425 5' -62.3 NC_005345.2 + 18689 0.67 0.300575
Target:  5'- -cAGAUCG-CGcGCAGCGUGCCCGg- -3'
miRNA:   3'- ccUCUAGCgGCcCGUCGCGCGGGUgc -5'
26425 5' -62.3 NC_005345.2 + 31458 0.67 0.322636
Target:  5'- cGAGG-CGCCGGGguGCGgGUgUgagGCGg -3'
miRNA:   3'- cCUCUaGCGGCCCguCGCgCGgG---UGC- -5'
26425 5' -62.3 NC_005345.2 + 3014 0.67 0.322636
Target:  5'- cGAGGccaguaGCCGGGCGGCGgcagcaUGCUCGCu -3'
miRNA:   3'- cCUCUag----CGGCCCGUCGC------GCGGGUGc -5'
26425 5' -62.3 NC_005345.2 + 27955 0.67 0.322636
Target:  5'- cGGAGcgCGugaacCCGaacGGCGGUGCGCCguCGa -3'
miRNA:   3'- -CCUCuaGC-----GGC---CCGUCGCGCGGguGC- -5'
26425 5' -62.3 NC_005345.2 + 19436 0.66 0.362036
Target:  5'- --cGGUCGCaccgggcuCGGGCAGCaGCGCgaUCGCGu -3'
miRNA:   3'- ccuCUAGCG--------GCCCGUCG-CGCG--GGUGC- -5'
26425 5' -62.3 NC_005345.2 + 19153 0.66 0.353895
Target:  5'- cGGGAcgucgUCGCCGGGCccguacGGC-UGCCCGuCGa -3'
miRNA:   3'- cCUCU-----AGCGGCCCG------UCGcGCGGGU-GC- -5'
26425 5' -62.3 NC_005345.2 + 42946 0.66 0.353895
Target:  5'- gGGAGGUgGCCaGGGCGcCGCGgaaCgCGCGg -3'
miRNA:   3'- -CCUCUAgCGG-CCCGUcGCGCg--G-GUGC- -5'
26425 5' -62.3 NC_005345.2 + 38457 0.66 0.353088
Target:  5'- aGGAcag-GCCGGGCacAGCGCGggcacuuCCCGCGc -3'
miRNA:   3'- -CCUcuagCGGCCCG--UCGCGC-------GGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 3166 0.66 0.345883
Target:  5'- cGAGcUCGUCGGGguGCcGgGUCgGCGa -3'
miRNA:   3'- cCUCuAGCGGCCCguCG-CgCGGgUGC- -5'
26425 5' -62.3 NC_005345.2 + 3998 0.66 0.345883
Target:  5'- --cGGUCGgaCGagccGCAGCGCGUCCGCGu -3'
miRNA:   3'- ccuCUAGCg-GCc---CGUCGCGCGGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 37981 0.66 0.338003
Target:  5'- cGGAccugCGCCGGGguGC-CGCCgUACa -3'
miRNA:   3'- -CCUcua-GCGGCCCguCGcGCGG-GUGc -5'
26425 5' -62.3 NC_005345.2 + 1168 0.66 0.338003
Target:  5'- aGGGGAgcgugCGCggcgcacaCGGGCGGCucgGCaguccgGCCCGCGg -3'
miRNA:   3'- -CCUCUa----GCG--------GCCCGUCG---CG------CGGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.