Results 1 - 20 of 273 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26429 | 3' | -59.2 | NC_005345.2 | + | 22000 | 0.66 | 0.54099 |
Target: 5'- gCCGcugccGCACGgCGgcauGCCGGGC-C-CGCCg -3' miRNA: 3'- -GGCu----CGUGCaGC----UGGCCCGuGaGCGG- -5' |
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26429 | 3' | -59.2 | NC_005345.2 | + | 32726 | 0.66 | 0.530725 |
Target: 5'- gCCGAGUcCcUCGGCgUGGGCccGCUUGCUc -3' miRNA: 3'- -GGCUCGuGcAGCUG-GCCCG--UGAGCGG- -5' |
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26429 | 3' | -59.2 | NC_005345.2 | + | 27055 | 0.66 | 0.529702 |
Target: 5'- aCCGAGC-CGcCGACCGucaacggaaccuuGcGCGCggugUGCCg -3' miRNA: 3'- -GGCUCGuGCaGCUGGC-------------C-CGUGa---GCGG- -5' |
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26429 | 3' | -59.2 | NC_005345.2 | + | 3747 | 0.66 | 0.529702 |
Target: 5'- gUCGAagaacucGCGCGUgGGCUuGGCacacccccACUCGCCg -3' miRNA: 3'- -GGCU-------CGUGCAgCUGGcCCG--------UGAGCGG- -5' |
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26429 | 3' | -59.2 | NC_005345.2 | + | 7784 | 0.66 | 0.520532 |
Target: 5'- aUGAGUcCGUUG-CCGaGCGCUgCGCCg -3' miRNA: 3'- gGCUCGuGCAGCuGGCcCGUGA-GCGG- -5' |
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26429 | 3' | -59.2 | NC_005345.2 | + | 46776 | 0.66 | 0.520532 |
Target: 5'- aCG-GCGCG-CGACgGGGagguCACgCGCCg -3' miRNA: 3'- gGCuCGUGCaGCUGgCCC----GUGaGCGG- -5' |
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26429 | 3' | -59.2 | NC_005345.2 | + | 3879 | 0.66 | 0.520532 |
Target: 5'- gCCGAGUgccugcagcgcgGCGagGGCgGGGCGgaCGUCg -3' miRNA: 3'- -GGCUCG------------UGCagCUGgCCCGUgaGCGG- -5' |
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26429 | 3' | -59.2 | NC_005345.2 | + | 1174 | 0.66 | 0.520532 |
Target: 5'- gCGuGCGCGgCGcACaCGGGCGgCUCGgCa -3' miRNA: 3'- gGCuCGUGCaGC-UG-GCCCGU-GAGCgG- -5' |
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26429 | 3' | -59.2 | NC_005345.2 | + | 38515 | 0.66 | 0.510417 |
Target: 5'- cCUGAGuCACGcgugcugcUCGAcCCGGGCcgaccgGCcgCGCCg -3' miRNA: 3'- -GGCUC-GUGC--------AGCU-GGCCCG------UGa-GCGG- -5' |
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26429 | 3' | -59.2 | NC_005345.2 | + | 41416 | 0.66 | 0.53996 |
Target: 5'- gUCGAGCcgguccugcagcaGCGgcagcUCGuACCGgcGGCACUCGCg -3' miRNA: 3'- -GGCUCG-------------UGC-----AGC-UGGC--CCGUGAGCGg -5' |
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26429 | 3' | -59.2 | NC_005345.2 | + | 29436 | 0.66 | 0.54099 |
Target: 5'- gCGGGCgucguccucgGCGUCGAggcGGUACUCGUCg -3' miRNA: 3'- gGCUCG----------UGCAGCUggcCCGUGAGCGG- -5' |
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26429 | 3' | -59.2 | NC_005345.2 | + | 46060 | 0.66 | 0.54099 |
Target: 5'- cCCGAGgGuCGaucaggCGGCCGGG-GC-CGCCg -3' miRNA: 3'- -GGCUCgU-GCa-----GCUGGCCCgUGaGCGG- -5' |
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26429 | 3' | -59.2 | NC_005345.2 | + | 45481 | 0.66 | 0.55132 |
Target: 5'- gUGGGCAUGUCGGCgaagguggUGGGgGC-CGCg -3' miRNA: 3'- gGCUCGUGCAGCUG--------GCCCgUGaGCGg -5' |
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26429 | 3' | -59.2 | NC_005345.2 | + | 41895 | 0.66 | 0.55132 |
Target: 5'- gUCGAGCAgcugcuCGUCGucGCCuGGUcgUCGCCg -3' miRNA: 3'- -GGCUCGU------GCAGC--UGGcCCGugAGCGG- -5' |
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26429 | 3' | -59.2 | NC_005345.2 | + | 16179 | 0.66 | 0.55132 |
Target: 5'- cUCGcGCAgGUCGGCCucgacuGC-CUCGCCg -3' miRNA: 3'- -GGCuCGUgCAGCUGGcc----CGuGAGCGG- -5' |
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26429 | 3' | -59.2 | NC_005345.2 | + | 8680 | 0.66 | 0.55132 |
Target: 5'- gCCGAuCGCcUCccaCGGGUugUCGCCg -3' miRNA: 3'- -GGCUcGUGcAGcugGCCCGugAGCGG- -5' |
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26429 | 3' | -59.2 | NC_005345.2 | + | 2937 | 0.66 | 0.55132 |
Target: 5'- aCGcAGgACGUCGAucaaCCGGGCGgaaaggucgUUCGCg -3' miRNA: 3'- gGC-UCgUGCAGCU----GGCCCGU---------GAGCGg -5' |
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26429 | 3' | -59.2 | NC_005345.2 | + | 25583 | 0.66 | 0.55132 |
Target: 5'- gCCGcAGCuCGgacgCGGCCGacaGGuCAcCUCGCCa -3' miRNA: 3'- -GGC-UCGuGCa---GCUGGC---CC-GU-GAGCGG- -5' |
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26429 | 3' | -59.2 | NC_005345.2 | + | 23875 | 0.66 | 0.545115 |
Target: 5'- aCCGGGUcuuACGcCGACgGGaguugagcaggugccGCACgagCGCCg -3' miRNA: 3'- -GGCUCG---UGCaGCUGgCC---------------CGUGa--GCGG- -5' |
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26429 | 3' | -59.2 | NC_005345.2 | + | 2905 | 0.66 | 0.54099 |
Target: 5'- aCGAGCGgauCGgcgGACCGGGCAgCg-GCCc -3' miRNA: 3'- gGCUCGU---GCag-CUGGCCCGU-GagCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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