miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26429 3' -59.2 NC_005345.2 + 46588 1.14 0.000224
Target:  5'- cCCGAGCACGUCGACCGGGCACUCGCCg -3'
miRNA:   3'- -GGCUCGUGCAGCUGGCCCGUGAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 5407 0.73 0.191794
Target:  5'- cCCG-GCG-GUCGGCCGaGCGuCUCGCCg -3'
miRNA:   3'- -GGCuCGUgCAGCUGGCcCGU-GAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 35689 0.73 0.201938
Target:  5'- gCCGGGUuCGUCGGuCUGGGCAagcUGCCg -3'
miRNA:   3'- -GGCUCGuGCAGCU-GGCCCGUga-GCGG- -5'
26429 3' -59.2 NC_005345.2 + 22000 0.66 0.54099
Target:  5'- gCCGcugccGCACGgCGgcauGCCGGGC-C-CGCCg -3'
miRNA:   3'- -GGCu----CGUGCaGC----UGGCCCGuGaGCGG- -5'
26429 3' -59.2 NC_005345.2 + 14322 0.78 0.095769
Target:  5'- gCGAGCACGUCGGCgagGGGCAggCGCa -3'
miRNA:   3'- gGCUCGUGCAGCUGg--CCCGUgaGCGg -5'
26429 3' -59.2 NC_005345.2 + 30084 0.78 0.095769
Target:  5'- gCGAGCACGgccccgagaCGGCCGGGU--UCGCCg -3'
miRNA:   3'- gGCUCGUGCa--------GCUGGCCCGugAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 12046 0.77 0.103951
Target:  5'- gCCGAGCugGa-GACCGGcGCcgaguucaucGCUCGCCg -3'
miRNA:   3'- -GGCUCGugCagCUGGCC-CG----------UGAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 46787 0.77 0.103951
Target:  5'- gCGAGguCG-CGACCGGGCug-CGCCg -3'
miRNA:   3'- gGCUCguGCaGCUGGCCCGugaGCGG- -5'
26429 3' -59.2 NC_005345.2 + 5301 0.75 0.151511
Target:  5'- gCCGAcGCccCGUCGACCGGGCAgUaCGUg -3'
miRNA:   3'- -GGCU-CGu-GCAGCUGGCCCGUgA-GCGg -5'
26429 3' -59.2 NC_005345.2 + 43546 0.73 0.186891
Target:  5'- gCCGAGCuCGUCG-CCGacaaGCUCGCCg -3'
miRNA:   3'- -GGCUCGuGCAGCuGGCccg-UGAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 12622 0.74 0.16837
Target:  5'- gCCGGGCACGgcUCGggcACCGGGC-CUCGg- -3'
miRNA:   3'- -GGCUCGUGC--AGC---UGGCCCGuGAGCgg -5'
26429 3' -59.2 NC_005345.2 + 9267 0.76 0.136199
Target:  5'- gCCGAcaagucccGCAUGUCGGCCGcGGCGuacCUCGCg -3'
miRNA:   3'- -GGCU--------CGUGCAGCUGGC-CCGU---GAGCGg -5'
26429 3' -59.2 NC_005345.2 + 5727 0.82 0.049167
Target:  5'- gCGAGCggGCGUCGAacUUGGGCACUCGCg -3'
miRNA:   3'- gGCUCG--UGCAGCU--GGCCCGUGAGCGg -5'
26429 3' -59.2 NC_005345.2 + 42700 0.74 0.177416
Target:  5'- gCCGGGCGCGaccCGGCUGGauaucggcgacCACUCGCCg -3'
miRNA:   3'- -GGCUCGUGCa--GCUGGCCc----------GUGAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 10530 0.79 0.072691
Target:  5'- gCCGAgGCcgACGUCGAgaucgccguguCCGaGGCGCUCGCCa -3'
miRNA:   3'- -GGCU-CG--UGCAGCU-----------GGC-CCGUGAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 22749 0.77 0.115885
Target:  5'- gCGAGgACGacgggUCGAUCGGGCACUCGgUCa -3'
miRNA:   3'- gGCUCgUGC-----AGCUGGCCCGUGAGC-GG- -5'
26429 3' -59.2 NC_005345.2 + 14670 0.73 0.186891
Target:  5'- gCCGGGCgGCGUCGccgauGCCGGGCcgGCcgUGCCc -3'
miRNA:   3'- -GGCUCG-UGCAGC-----UGGCCCG--UGa-GCGG- -5'
26429 3' -59.2 NC_005345.2 + 33417 0.73 0.198847
Target:  5'- gUCGGGUACGUaucggucgucccgagCGcCCGGGgAUUCGCCg -3'
miRNA:   3'- -GGCUCGUGCA---------------GCuGGCCCgUGAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 25800 0.79 0.076834
Target:  5'- gCGAugGCACaGUCGGCCGGGUacauGCUCGUCg -3'
miRNA:   3'- gGCU--CGUG-CAGCUGGCCCG----UGAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 17371 0.78 0.096824
Target:  5'- cCCGAGUGCGUCGACCccgcacccgagacGCACUCGCa -3'
miRNA:   3'- -GGCUCGUGCAGCUGGcc-----------CGUGAGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.