miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26429 3' -59.2 NC_005345.2 + 258 0.68 0.432871
Target:  5'- gCCGuGUAUGUCGGCgGGGgucuuCUCGUa -3'
miRNA:   3'- -GGCuCGUGCAGCUGgCCCgu---GAGCGg -5'
26429 3' -59.2 NC_005345.2 + 555 0.68 0.396752
Target:  5'- uCCG-GCGCGagGucguaCGGGUcCUCGCCa -3'
miRNA:   3'- -GGCuCGUGCagCug---GCCCGuGAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 785 0.74 0.16837
Target:  5'- gCgGGGgAUGcCGACCGGGCccgcuuacaccuGCUCGCCc -3'
miRNA:   3'- -GgCUCgUGCaGCUGGCCCG------------UGAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 1174 0.66 0.520532
Target:  5'- gCGuGCGCGgCGcACaCGGGCGgCUCGgCa -3'
miRNA:   3'- gGCuCGUGCaGC-UG-GCCCGU-GAGCgG- -5'
26429 3' -59.2 NC_005345.2 + 1537 0.85 0.027077
Target:  5'- gUCGGGCGCGUCGAgccaaCCGGGCACcgugaggcggcagUCGCCg -3'
miRNA:   3'- -GGCUCGUGCAGCU-----GGCCCGUG-------------AGCGG- -5'
26429 3' -59.2 NC_005345.2 + 2160 0.73 0.212546
Target:  5'- gCCGAGCuuccacGCGUUGACCGuGGCGggugcaaCGCCg -3'
miRNA:   3'- -GGCUCG------UGCAGCUGGC-CCGUga-----GCGG- -5'
26429 3' -59.2 NC_005345.2 + 2524 0.66 0.530725
Target:  5'- aUGuGUcaACGgCGACgGGGCACccggCGCCg -3'
miRNA:   3'- gGCuCG--UGCaGCUGgCCCGUGa---GCGG- -5'
26429 3' -59.2 NC_005345.2 + 2635 0.72 0.235199
Target:  5'- gCG-GCGCGgacUGACCGGGUcaaaGCUCGCa -3'
miRNA:   3'- gGCuCGUGCa--GCUGGCCCG----UGAGCGg -5'
26429 3' -59.2 NC_005345.2 + 2905 0.66 0.54099
Target:  5'- aCGAGCGgauCGgcgGACCGGGCAgCg-GCCc -3'
miRNA:   3'- gGCUCGU---GCag-CUGGCCCGU-GagCGG- -5'
26429 3' -59.2 NC_005345.2 + 2937 0.66 0.55132
Target:  5'- aCGcAGgACGUCGAucaaCCGGGCGgaaaggucgUUCGCg -3'
miRNA:   3'- gGC-UCgUGCAGCU----GGCCCGU---------GAGCGg -5'
26429 3' -59.2 NC_005345.2 + 3165 0.68 0.405599
Target:  5'- gCGAGCuCGUCGggguGCCGGGUcgGCgaGCCc -3'
miRNA:   3'- gGCUCGuGCAGC----UGGCCCG--UGagCGG- -5'
26429 3' -59.2 NC_005345.2 + 3425 0.69 0.362631
Target:  5'- gCGGGCGCGgCGGCgggcggcgaugCGGGCcccgaGCUCGCg -3'
miRNA:   3'- gGCUCGUGCaGCUG-----------GCCCG-----UGAGCGg -5'
26429 3' -59.2 NC_005345.2 + 3667 0.71 0.279682
Target:  5'- gCCGGGaucgUGUCGuuuGCCGGGUGgUCGCCc -3'
miRNA:   3'- -GGCUCgu--GCAGC---UGGCCCGUgAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 3747 0.66 0.529702
Target:  5'- gUCGAagaacucGCGCGUgGGCUuGGCacacccccACUCGCCg -3'
miRNA:   3'- -GGCU-------CGUGCAgCUGGcCCG--------UGAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 3796 0.68 0.385438
Target:  5'- gCGAuCACGUCGACgGGcagaucgaggccgcGCagcaGCUCGCCg -3'
miRNA:   3'- gGCUcGUGCAGCUGgCC--------------CG----UGAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 3879 0.66 0.520532
Target:  5'- gCCGAGUgccugcagcgcgGCGagGGCgGGGCGgaCGUCg -3'
miRNA:   3'- -GGCUCG------------UGCagCUGgCCCGUgaGCGG- -5'
26429 3' -59.2 NC_005345.2 + 3947 0.68 0.405599
Target:  5'- aCCGGGCgucuguACGUCGAggcgacccCCGGGU--UCGUCa -3'
miRNA:   3'- -GGCUCG------UGCAGCU--------GGCCCGugAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 4117 0.71 0.272939
Target:  5'- cCCGAGCgguugGCGuUCGAgcggcugcUCGcGGCGCUCGUCg -3'
miRNA:   3'- -GGCUCG-----UGC-AGCU--------GGC-CCGUGAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 4157 0.68 0.432871
Target:  5'- nCGAGCGggUGUCGACgCGgcaGGCGCUCacggggcggcagGCCg -3'
miRNA:   3'- gGCUCGU--GCAGCUG-GC---CCGUGAG------------CGG- -5'
26429 3' -59.2 NC_005345.2 + 4495 0.67 0.49044
Target:  5'- aCG-GCACGgaggagcCGACCGGGa--UCGCUc -3'
miRNA:   3'- gGCuCGUGCa------GCUGGCCCgugAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.