miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26429 3' -59.2 NC_005345.2 + 46588 1.14 0.000224
Target:  5'- cCCGAGCACGUCGACCGGGCACUCGCCg -3'
miRNA:   3'- -GGCUCGUGCAGCUGGCCCGUGAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 24161 0.86 0.02225
Target:  5'- gCGAGCACcUCGACgaCGGGCACUUGCCa -3'
miRNA:   3'- gGCUCGUGcAGCUG--GCCCGUGAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 1537 0.85 0.027077
Target:  5'- gUCGGGCGCGUCGAgccaaCCGGGCACcgugaggcggcagUCGCCg -3'
miRNA:   3'- -GGCUCGUGCAGCU-----GGCCCGUG-------------AGCGG- -5'
26429 3' -59.2 NC_005345.2 + 37504 0.82 0.043935
Target:  5'- gCCGGGCGCGggcugCGGCgCGGuGCGCUCGCUc -3'
miRNA:   3'- -GGCUCGUGCa----GCUG-GCC-CGUGAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 5727 0.82 0.049167
Target:  5'- gCGAGCggGCGUCGAacUUGGGCACUCGCg -3'
miRNA:   3'- gGCUCG--UGCAGCU--GGCCCGUGAGCGg -5'
26429 3' -59.2 NC_005345.2 + 10530 0.79 0.072691
Target:  5'- gCCGAgGCcgACGUCGAgaucgccguguCCGaGGCGCUCGCCa -3'
miRNA:   3'- -GGCU-CG--UGCAGCU-----------GGC-CCGUGAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 25800 0.79 0.076834
Target:  5'- gCGAugGCACaGUCGGCCGGGUacauGCUCGUCg -3'
miRNA:   3'- gGCU--CGUG-CAGCUGGCCCG----UGAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 30084 0.78 0.095769
Target:  5'- gCGAGCACGgccccgagaCGGCCGGGU--UCGCCg -3'
miRNA:   3'- gGCUCGUGCa--------GCUGGCCCGugAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 14322 0.78 0.095769
Target:  5'- gCGAGCACGUCGGCgagGGGCAggCGCa -3'
miRNA:   3'- gGCUCGUGCAGCUGg--CCCGUgaGCGg -5'
26429 3' -59.2 NC_005345.2 + 17371 0.78 0.096824
Target:  5'- cCCGAGUGCGUCGACCccgcacccgagacGCACUCGCa -3'
miRNA:   3'- -GGCUCGUGCAGCUGGcc-----------CGUGAGCGg -5'
26429 3' -59.2 NC_005345.2 + 46787 0.77 0.103951
Target:  5'- gCGAGguCG-CGACCGGGCug-CGCCg -3'
miRNA:   3'- gGCUCguGCaGCUGGCCCGugaGCGG- -5'
26429 3' -59.2 NC_005345.2 + 12046 0.77 0.103951
Target:  5'- gCCGAGCugGa-GACCGGcGCcgaguucaucGCUCGCCg -3'
miRNA:   3'- -GGCUCGugCagCUGGCC-CG----------UGAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 20992 0.77 0.112786
Target:  5'- gCGAGgaACGcCGACCGGGCGacgcgUUCGCCg -3'
miRNA:   3'- gGCUCg-UGCaGCUGGCCCGU-----GAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 22749 0.77 0.115885
Target:  5'- gCGAGgACGacgggUCGAUCGGGCACUCGgUCa -3'
miRNA:   3'- gGCUCgUGC-----AGCUGGCCCGUGAGC-GG- -5'
26429 3' -59.2 NC_005345.2 + 41551 0.76 0.132599
Target:  5'- gUCGAcgACGUCGugCGcGCGCUCGCCg -3'
miRNA:   3'- -GGCUcgUGCAGCugGCcCGUGAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 9267 0.76 0.136199
Target:  5'- gCCGAcaagucccGCAUGUCGGCCGcGGCGuacCUCGCg -3'
miRNA:   3'- -GGCU--------CGUGCAGCUGGC-CCGU---GAGCGg -5'
26429 3' -59.2 NC_005345.2 + 22229 0.75 0.15111
Target:  5'- cCCGAcaGCGCGUCGuACCGGucggcgaGCGC-CGCCu -3'
miRNA:   3'- -GGCU--CGUGCAGC-UGGCC-------CGUGaGCGG- -5'
26429 3' -59.2 NC_005345.2 + 5301 0.75 0.151511
Target:  5'- gCCGAcGCccCGUCGACCGGGCAgUaCGUg -3'
miRNA:   3'- -GGCU-CGu-GCAGCUGGCCCGUgA-GCGg -5'
26429 3' -59.2 NC_005345.2 + 30444 0.75 0.151511
Target:  5'- aCCGGGCACaccccCGAuCCGGGCACgcugCGCg -3'
miRNA:   3'- -GGCUCGUGca---GCU-GGCCCGUGa---GCGg -5'
26429 3' -59.2 NC_005345.2 + 39527 0.74 0.16837
Target:  5'- cUCGGGCACGgCGAgCGcaugcgcgaGGCACUCGCUc -3'
miRNA:   3'- -GGCUCGUGCaGCUgGC---------CCGUGAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.