miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2643 3' -61.6 NC_001491.2 + 76174 0.66 0.683942
Target:  5'- uCGCuCCCGccGCGCCGCCgCcgcagcagcccucgcUCCCGC-Cg -3'
miRNA:   3'- -GCGuGGGUu-UGCGGCGG-G---------------AGGGCGaG- -5'
2643 3' -61.6 NC_001491.2 + 76110 0.66 0.683942
Target:  5'- uCGCuCCCGccGCGCCGCCgCcgcagcagcccucgcUCCCGC-Cg -3'
miRNA:   3'- -GCGuGGGUu-UGCGGCGG-G---------------AGGGCGaG- -5'
2643 3' -61.6 NC_001491.2 + 76046 0.66 0.683942
Target:  5'- uCGCuCCCGccGCGCCGCCgCcgcagcagcccucgcUCCCGC-Cg -3'
miRNA:   3'- -GCGuGGGUu-UGCGGCGG-G---------------AGGGCGaG- -5'
2643 3' -61.6 NC_001491.2 + 75982 0.66 0.683942
Target:  5'- uCGCuCCCGccGCGCCGCCgCcgcagcagcccucgcUCCCGC-Cg -3'
miRNA:   3'- -GCGuGGGUu-UGCGGCGG-G---------------AGGGCGaG- -5'
2643 3' -61.6 NC_001491.2 + 84464 0.66 0.680025
Target:  5'- cCGCGCCCAggcgAGCGCagaGCCgggcgCCCGUcCa -3'
miRNA:   3'- -GCGUGGGU----UUGCGg--CGGga---GGGCGaG- -5'
2643 3' -61.6 NC_001491.2 + 51484 0.66 0.670208
Target:  5'- aCGUGUCCGAGgGCCGCCUUCUgagcggCGCUUc -3'
miRNA:   3'- -GCGUGGGUUUgCGGCGGGAGG------GCGAG- -5'
2643 3' -61.6 NC_001491.2 + 2413 0.66 0.660362
Target:  5'- uGCAUCCAGGCG--GCCCU-CCGuCUCa -3'
miRNA:   3'- gCGUGGGUUUGCggCGGGAgGGC-GAG- -5'
2643 3' -61.6 NC_001491.2 + 126885 0.66 0.660362
Target:  5'- gGUACggcGugGCCGCuccCCUCUCGCUCg -3'
miRNA:   3'- gCGUGgguUugCGGCG---GGAGGGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 31474 0.66 0.659376
Target:  5'- gGCGCCCGucguccgAGCGcCCGCCgCggaacCCCGC-Ca -3'
miRNA:   3'- gCGUGGGU-------UUGC-GGCGG-Ga----GGGCGaG- -5'
2643 3' -61.6 NC_001491.2 + 32290 0.66 0.657404
Target:  5'- gGCACUCGcagAACGCCGCgaaaaccccgucggCCgCCgGCUCu -3'
miRNA:   3'- gCGUGGGU---UUGCGGCG--------------GGaGGgCGAG- -5'
2643 3' -61.6 NC_001491.2 + 34256 0.66 0.650495
Target:  5'- aGCACCa----GCCGCagaaggCCCGCUCc -3'
miRNA:   3'- gCGUGGguuugCGGCGgga---GGGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 36131 0.66 0.650495
Target:  5'- aGCACaacgCAGACuCCGCCuagaCUCCCGcCUCc -3'
miRNA:   3'- gCGUGg---GUUUGcGGCGG----GAGGGC-GAG- -5'
2643 3' -61.6 NC_001491.2 + 103102 0.66 0.649507
Target:  5'- gCGCGCCCAAauauaggacucaaGCGCa-CCUUCCCacCUCg -3'
miRNA:   3'- -GCGUGGGUU-------------UGCGgcGGGAGGGc-GAG- -5'
2643 3' -61.6 NC_001491.2 + 24717 0.66 0.640614
Target:  5'- cCGcCGCCgcGACGCCGCCCcgccccggggaCCCGCg- -3'
miRNA:   3'- -GC-GUGGguUUGCGGCGGGa----------GGGCGag -5'
2643 3' -61.6 NC_001491.2 + 26002 0.66 0.630727
Target:  5'- -uCAuCCCAGGCGgcguuuccccuaCCGCUCUccCCCGCUCg -3'
miRNA:   3'- gcGU-GGGUUUGC------------GGCGGGA--GGGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 1570 0.67 0.620841
Target:  5'- gGC-CCC-AGCGCCGCgCCggCCGCa- -3'
miRNA:   3'- gCGuGGGuUUGCGGCG-GGagGGCGag -5'
2643 3' -61.6 NC_001491.2 + 26765 0.67 0.620841
Target:  5'- gGCGCCCGccauguugaguAGCGCgGCCCagUagCGCUCu -3'
miRNA:   3'- gCGUGGGU-----------UUGCGgCGGGagG--GCGAG- -5'
2643 3' -61.6 NC_001491.2 + 27088 0.67 0.620841
Target:  5'- gCGCGgCCAGGCcuccgcggGCgGCCCggCgCCGCUCc -3'
miRNA:   3'- -GCGUgGGUUUG--------CGgCGGGa-G-GGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 33392 0.67 0.620841
Target:  5'- gGCuACCCGGcccAgGCCGCCgCUgCCGCg- -3'
miRNA:   3'- gCG-UGGGUU---UgCGGCGG-GAgGGCGag -5'
2643 3' -61.6 NC_001491.2 + 136994 0.67 0.620841
Target:  5'- gGUGCCgcUAAACGCgagGCCCUUaCCGCUCu -3'
miRNA:   3'- gCGUGG--GUUUGCGg--CGGGAG-GGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.