miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26430 3' -62.8 NC_005345.2 + 19385 0.66 0.347427
Target:  5'- cGGCGGUCGuGccgagcagCGUCgCGCCGaGCUCGg -3'
miRNA:   3'- cUCGCCAGC-Ca-------GCAGaGCGGC-CGGGU- -5'
26430 3' -62.8 NC_005345.2 + 28163 0.66 0.347427
Target:  5'- --cCGGUCGG-CGUucCUCGCCGcGgCCAa -3'
miRNA:   3'- cucGCCAGCCaGCA--GAGCGGC-CgGGU- -5'
26430 3' -62.8 NC_005345.2 + 8438 0.66 0.347427
Target:  5'- cGAGCGGUCGGUguggaCGgacggCaCCGGCCaCAc -3'
miRNA:   3'- -CUCGCCAGCCA-----GCaga--GcGGCCGG-GU- -5'
26430 3' -62.8 NC_005345.2 + 35867 0.66 0.338744
Target:  5'- cGGgGGUCGGgggCGUCgUCGCCGacgagcuGCUCGc -3'
miRNA:   3'- cUCgCCAGCCa--GCAG-AGCGGC-------CGGGU- -5'
26430 3' -62.8 NC_005345.2 + 43056 0.66 0.338744
Target:  5'- -cGCGGugccggcUCGGUCGUgUCGUCGGgCa- -3'
miRNA:   3'- cuCGCC-------AGCCAGCAgAGCGGCCgGgu -5'
26430 3' -62.8 NC_005345.2 + 4119 0.66 0.324119
Target:  5'- cGAGCGGUUGG-CGUucgagcggcugCUCGCgGcGCUCGu -3'
miRNA:   3'- -CUCGCCAGCCaGCA-----------GAGCGgC-CGGGU- -5'
26430 3' -62.8 NC_005345.2 + 24645 0.66 0.323362
Target:  5'- -cGCGGU-GGUCGaccaggaUCcCGCgGGCCCGg -3'
miRNA:   3'- cuCGCCAgCCAGC-------AGaGCGgCCGGGU- -5'
26430 3' -62.8 NC_005345.2 + 9927 0.66 0.323362
Target:  5'- gGGGCaGUCGG-CGUCggcccgacggUCGCCaacccgcGGCCCGg -3'
miRNA:   3'- -CUCGcCAGCCaGCAG----------AGCGG-------CCGGGU- -5'
26430 3' -62.8 NC_005345.2 + 46407 0.66 0.316613
Target:  5'- aGGCGGcacuugUCGaccGcCGUCUCGCCGcGUCCAg -3'
miRNA:   3'- cUCGCC------AGC---CaGCAGAGCGGC-CGGGU- -5'
26430 3' -62.8 NC_005345.2 + 29435 0.66 0.309238
Target:  5'- -uGCGGgcgucguccUCGG-CGUCgaggcgguacUCGUCGGCCCGg -3'
miRNA:   3'- cuCGCC---------AGCCaGCAG----------AGCGGCCGGGU- -5'
26430 3' -62.8 NC_005345.2 + 18708 0.67 0.301995
Target:  5'- -cGCGGUCGGcgUCGUCaUCGCaUGGCg-- -3'
miRNA:   3'- cuCGCCAGCC--AGCAG-AGCG-GCCGggu -5'
26430 3' -62.8 NC_005345.2 + 18389 0.67 0.287903
Target:  5'- --cCGGUCGGUCGUCgUGCCcGGCg-- -3'
miRNA:   3'- cucGCCAGCCAGCAGaGCGG-CCGggu -5'
26430 3' -62.8 NC_005345.2 + 5593 0.67 0.287903
Target:  5'- aGGCGGUCGG-CGagCUUGUCGGCg-- -3'
miRNA:   3'- cUCGCCAGCCaGCa-GAGCGGCCGggu -5'
26430 3' -62.8 NC_005345.2 + 43920 0.67 0.281053
Target:  5'- cAGCGcGUCGG-CGaUCagGCCGGCCgCGa -3'
miRNA:   3'- cUCGC-CAGCCaGC-AGagCGGCCGG-GU- -5'
26430 3' -62.8 NC_005345.2 + 2777 0.67 0.267743
Target:  5'- cGGCGGccUCGGUaCGgCUUGUCGGCgCCGg -3'
miRNA:   3'- cUCGCC--AGCCA-GCaGAGCGGCCG-GGU- -5'
26430 3' -62.8 NC_005345.2 + 7958 0.67 0.267743
Target:  5'- cGGGCGGggaucccgUCGGUCGUCgUGUCGuGCCg- -3'
miRNA:   3'- -CUCGCC--------AGCCAGCAGaGCGGC-CGGgu -5'
26430 3' -62.8 NC_005345.2 + 48363 0.68 0.254947
Target:  5'- aAGCGGgccCGGUCGgcaucccccgC-CGCCGGCCgGg -3'
miRNA:   3'- cUCGCCa--GCCAGCa---------GaGCGGCCGGgU- -5'
26430 3' -62.8 NC_005345.2 + 40063 0.68 0.248739
Target:  5'- -uGCGGgCGGUCGcCggcgaCGgCGGCCCGg -3'
miRNA:   3'- cuCGCCaGCCAGCaGa----GCgGCCGGGU- -5'
26430 3' -62.8 NC_005345.2 + 20569 0.68 0.242656
Target:  5'- -uGCGGUCGGUCacaUUC-CCGGgCCCAa -3'
miRNA:   3'- cuCGCCAGCCAGca-GAGcGGCC-GGGU- -5'
26430 3' -62.8 NC_005345.2 + 17275 0.68 0.236698
Target:  5'- -cGCGGUCcuGGUCugcgcgcggGUCUUGUCGGCCgGa -3'
miRNA:   3'- cuCGCCAG--CCAG---------CAGAGCGGCCGGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.