Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26447 | 5' | -51.6 | NC_005357.1 | + | 15179 | 0.68 | 0.762215 |
Target: 5'- gUC-GGGCCugguaGGCAgcuAUUACGGcGCGCGGu -3' miRNA: 3'- gAGuUUCGG-----CCGU---UAAUGCU-CGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 30192 | 0.67 | 0.772787 |
Target: 5'- ---cAGGCCGGCG---GCGuguucuGGCGCGGc -3' miRNA: 3'- gaguUUCGGCCGUuaaUGC------UCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 882 | 0.67 | 0.772787 |
Target: 5'- -cCGAcGuUCGGCAAggGCuGGGCGCGGc -3' miRNA: 3'- gaGUUuC-GGCCGUUaaUG-CUCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 37182 | 0.67 | 0.783202 |
Target: 5'- gUCGAGGCCGuaGGccGCGAGCacGUGGc -3' miRNA: 3'- gAGUUUCGGCcgUUaaUGCUCG--CGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 40736 | 0.69 | 0.662094 |
Target: 5'- gUCAuGGCCGGCc--UGCGccuGGCGCGu -3' miRNA: 3'- gAGUuUCGGCCGuuaAUGC---UCGCGCc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 24800 | 0.69 | 0.650652 |
Target: 5'- gUCGAGGCCGcGCA------GGCGCGGu -3' miRNA: 3'- gAGUUUCGGC-CGUuaaugcUCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 38459 | 0.79 | 0.204114 |
Target: 5'- uUCAAAGCCGGCcgcgGCGAGCGgcaGGc -3' miRNA: 3'- gAGUUUCGGCCGuuaaUGCUCGCg--CC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 32591 | 0.78 | 0.243239 |
Target: 5'- aUCcuGGCCGGCAucaccagccugcACGGGCGCGGa -3' miRNA: 3'- gAGuuUCGGCCGUuaa---------UGCUCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 20834 | 0.75 | 0.346796 |
Target: 5'- ----cAGCCGcGCGAUgaguCGAGCGCGGc -3' miRNA: 3'- gaguuUCGGC-CGUUAau--GCUCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 18648 | 0.75 | 0.373505 |
Target: 5'- uCUCGGacGGCCaGGCcGUcaccGCGAGCGCGGc -3' miRNA: 3'- -GAGUU--UCGG-CCGuUAa---UGCUCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 13251 | 0.72 | 0.514938 |
Target: 5'- -aCAAcGCCGGcCAAggGCGcccAGCGCGGc -3' miRNA: 3'- gaGUUuCGGCC-GUUaaUGC---UCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 40243 | 0.71 | 0.536997 |
Target: 5'- -cCuuGGCCGGCAGUU-CGAcGCGCa- -3' miRNA: 3'- gaGuuUCGGCCGUUAAuGCU-CGCGcc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 36918 | 0.71 | 0.54703 |
Target: 5'- gUCGAGGCCGGCAuacuccacgaAUUugGcccacucGGCGgGGu -3' miRNA: 3'- gAGUUUCGGCCGU----------UAAugC-------UCGCgCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 27501 | 0.71 | 0.548149 |
Target: 5'- -cCAGGGCCuGCGGccgcCGGGCGCGGu -3' miRNA: 3'- gaGUUUCGGcCGUUaau-GCUCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 16496 | 0.71 | 0.570661 |
Target: 5'- uUCAAcgccGCCGGCGAUUACcc-CGCGGc -3' miRNA: 3'- gAGUUu---CGGCCGUUAAUGcucGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 23983 | 0.71 | 0.582003 |
Target: 5'- aUCAcgccuauGCCGGCAuggaagccGCGGGCGUGGc -3' miRNA: 3'- gAGUuu-----CGGCCGUuaa-----UGCUCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 8065 | 0.71 | 0.582003 |
Target: 5'- uUCGu-GCguuCGGCAA--ACGAGCGCGGc -3' miRNA: 3'- gAGUuuCG---GCCGUUaaUGCUCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 19244 | 0.7 | 0.616261 |
Target: 5'- aUCGAcGCCGGCGGc-ACGGGCaGCGa -3' miRNA: 3'- gAGUUuCGGCCGUUaaUGCUCG-CGCc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 5272 | 0.7 | 0.627724 |
Target: 5'- cCUCGAcgugggcacgguAGCCGGCAAUaucgACGAcGUGCaGGc -3' miRNA: 3'- -GAGUU------------UCGGCCGUUAa---UGCU-CGCG-CC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 7082 | 0.69 | 0.647216 |
Target: 5'- aUCAAcGCCaaguccucguucauGGCGAau-CGGGCGCGGa -3' miRNA: 3'- gAGUUuCGG--------------CCGUUaauGCUCGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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