miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2645 5' -59.6 NC_001491.2 + 43971 0.66 0.741049
Target:  5'- cGCCGGGgCgGGuGGC-GACGGaCAGCUg -3'
miRNA:   3'- -CGGUCUgGgUC-CCGuCUGUC-GUCGAg -5'
2645 5' -59.6 NC_001491.2 + 136299 0.66 0.731356
Target:  5'- cGCCGGggcuggcgGCCUuGGGCGG-UGGCAGCg- -3'
miRNA:   3'- -CGGUC--------UGGGuCCCGUCuGUCGUCGag -5'
2645 5' -59.6 NC_001491.2 + 11491 0.66 0.721578
Target:  5'- uGCCuGGCCCcucuGGGguGGgGGUcaggggAGCUCu -3'
miRNA:   3'- -CGGuCUGGGu---CCCguCUgUCG------UCGAG- -5'
2645 5' -59.6 NC_001491.2 + 64567 0.66 0.721578
Target:  5'- aGCCAG-UCgAGGGgGGugAGCGGgUUg -3'
miRNA:   3'- -CGGUCuGGgUCCCgUCugUCGUCgAG- -5'
2645 5' -59.6 NC_001491.2 + 23066 0.66 0.715675
Target:  5'- aGCCAGGCCCAGGuccGCGGGuuccacaacgggaaaUugGGCGGCc- -3'
miRNA:   3'- -CGGUCUGGGUCC---CGUCU---------------G--UCGUCGag -5'
2645 5' -59.6 NC_001491.2 + 34554 0.66 0.701805
Target:  5'- aGCCgaGGGCCCcgaccgucGGGGCGGAUucaGGCGcGUUCc -3'
miRNA:   3'- -CGG--UCUGGG--------UCCCGUCUG---UCGU-CGAG- -5'
2645 5' -59.6 NC_001491.2 + 68709 0.66 0.701805
Target:  5'- cGCUGGgauGCCCAcGGGUuaacGGugGcGCGGCUCg -3'
miRNA:   3'- -CGGUC---UGGGU-CCCG----UCugU-CGUCGAG- -5'
2645 5' -59.6 NC_001491.2 + 1273 0.66 0.691828
Target:  5'- gGCCuGGGCcacgCCGGGGCucGGGCcgGGguGCUCa -3'
miRNA:   3'- -CGG-UCUG----GGUCCCG--UCUG--UCguCGAG- -5'
2645 5' -59.6 NC_001491.2 + 48835 0.66 0.691828
Target:  5'- gGCCcaGGGCCCuGGGUGGGCcuccaaGGCcguggacaAGCUCa -3'
miRNA:   3'- -CGG--UCUGGGuCCCGUCUG------UCG--------UCGAG- -5'
2645 5' -59.6 NC_001491.2 + 31747 0.67 0.681802
Target:  5'- aGCCAGAacaugUUCGGGGUGGACGacGCuccGCUCu -3'
miRNA:   3'- -CGGUCU-----GGGUCCCGUCUGU--CGu--CGAG- -5'
2645 5' -59.6 NC_001491.2 + 64038 0.67 0.661637
Target:  5'- gGCgAGugCCAcGGCuucUAGCAGCUCg -3'
miRNA:   3'- -CGgUCugGGUcCCGucuGUCGUCGAG- -5'
2645 5' -59.6 NC_001491.2 + 93944 0.67 0.661637
Target:  5'- cGCCGGACCCAGuacGUAGccaugaAGCAGCc- -3'
miRNA:   3'- -CGGUCUGGGUCc--CGUCug----UCGUCGag -5'
2645 5' -59.6 NC_001491.2 + 125197 0.67 0.641379
Target:  5'- cGCCGGaACCCauaaGGGGCAu-CAGCGGUc- -3'
miRNA:   3'- -CGGUC-UGGG----UCCCGUcuGUCGUCGag -5'
2645 5' -59.6 NC_001491.2 + 24615 0.67 0.641379
Target:  5'- uCCcGcCCCGGGGCGGccgcugccGCGGCGGCg- -3'
miRNA:   3'- cGGuCuGGGUCCCGUC--------UGUCGUCGag -5'
2645 5' -59.6 NC_001491.2 + 2083 0.68 0.610958
Target:  5'- cGCCuggcGGAgCCCAGGcGCAGGCAgagguacucgacGCAGC-Cg -3'
miRNA:   3'- -CGG----UCU-GGGUCC-CGUCUGU------------CGUCGaG- -5'
2645 5' -59.6 NC_001491.2 + 5322 0.68 0.610958
Target:  5'- aGCCGGGCugggugCCGGGGacgccggcuGGGCGGCAGC-Cg -3'
miRNA:   3'- -CGGUCUG------GGUCCCg--------UCUGUCGUCGaG- -5'
2645 5' -59.6 NC_001491.2 + 2241 0.68 0.600838
Target:  5'- -gCGGuucCCCAGGGCcGcCAGCAGCg- -3'
miRNA:   3'- cgGUCu--GGGUCCCGuCuGUCGUCGag -5'
2645 5' -59.6 NC_001491.2 + 4822 0.68 0.599827
Target:  5'- aGCCGGagcggguGCgCCGGGGgaagcggcgcCGGAgCGGCAGCUCu -3'
miRNA:   3'- -CGGUC-------UG-GGUCCC----------GUCU-GUCGUCGAG- -5'
2645 5' -59.6 NC_001491.2 + 72021 0.69 0.539848
Target:  5'- uGCCcccgauaAGGCCCAGGGCcucugccgcGAUAGCAaaggccgcGCUCa -3'
miRNA:   3'- -CGG-------UCUGGGUCCCGu--------CUGUCGU--------CGAG- -5'
2645 5' -59.6 NC_001491.2 + 2548 0.69 0.511561
Target:  5'- cGCCAGGCCuCGGGGa--ACAGCugguugucgaugAGCUCc -3'
miRNA:   3'- -CGGUCUGG-GUCCCgucUGUCG------------UCGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.