Results 41 - 60 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26450 | 3' | -56.4 | NC_005357.1 | + | 9882 | 0.69 | 0.421553 |
Target: 5'- gCUGCuuCUCGGCCA-GGCGCGUg--- -3' miRNA: 3'- -GAUGugGAGCUGGUgCCGCGCGuucc -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 4742 | 0.69 | 0.431115 |
Target: 5'- -cGCGauguUCUCGGCCACGGC-CGCGAu- -3' miRNA: 3'- gaUGU----GGAGCUGGUGCCGcGCGUUcc -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 10686 | 0.69 | 0.431115 |
Target: 5'- uUGCGUCUUGACgGCaGCGCGCAcGGc -3' miRNA: 3'- gAUGUGGAGCUGgUGcCGCGCGUuCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 5409 | 0.69 | 0.437883 |
Target: 5'- -aGCACCUucugCGuacgcuCCACGGCGCggauggcggcguggGCGAGGu -3' miRNA: 3'- gaUGUGGA----GCu-----GGUGCCGCG--------------CGUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 29382 | 0.69 | 0.440802 |
Target: 5'- -aGC-CCUCgGACU-CGGCGCGguAGGc -3' miRNA: 3'- gaUGuGGAG-CUGGuGCCGCGCguUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 24103 | 0.69 | 0.440802 |
Target: 5'- -gGCACCcCGcuaCAUGcGCGCGUAGGGg -3' miRNA: 3'- gaUGUGGaGCug-GUGC-CGCGCGUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 26364 | 0.69 | 0.440802 |
Target: 5'- -gGCGCCgcgcgcggCGGCCACGuGCGCGaacuGGc -3' miRNA: 3'- gaUGUGGa-------GCUGGUGC-CGCGCguu-CC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 8861 | 0.68 | 0.450612 |
Target: 5'- gUugGCCUCGgucGCCACGaaGCGgGCGcGGg -3' miRNA: 3'- gAugUGGAGC---UGGUGC--CGCgCGUuCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 29759 | 0.68 | 0.450612 |
Target: 5'- ---gGCCUCGGCUgcugccagGCGcGUGCGCGAGa -3' miRNA: 3'- gaugUGGAGCUGG--------UGC-CGCGCGUUCc -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 34344 | 0.68 | 0.450612 |
Target: 5'- gUACA--UCGACUACGuGCGCGCcuuGGGc -3' miRNA: 3'- gAUGUggAGCUGGUGC-CGCGCGu--UCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 3667 | 0.68 | 0.450612 |
Target: 5'- -aGCACCUCGuCCACGccuuCGUGCGAa- -3' miRNA: 3'- gaUGUGGAGCuGGUGCc---GCGCGUUcc -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 24016 | 0.68 | 0.460541 |
Target: 5'- -gGCGCgUCGGCCAauucagcgaaGGCGaCGCGAcGGa -3' miRNA: 3'- gaUGUGgAGCUGGUg---------CCGC-GCGUU-CC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 6584 | 0.68 | 0.460541 |
Target: 5'- --cCGCCUCGGCCAgGGgGCuGCGGu- -3' miRNA: 3'- gauGUGGAGCUGGUgCCgCG-CGUUcc -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 28554 | 0.68 | 0.460541 |
Target: 5'- uUGCgGCCgcCGGCCaucGCGGCGCGCAc-- -3' miRNA: 3'- gAUG-UGGa-GCUGG---UGCCGCGCGUucc -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 13344 | 0.68 | 0.460541 |
Target: 5'- -cGgGCCU-GACCuCGGCGCcCGAGGa -3' miRNA: 3'- gaUgUGGAgCUGGuGCCGCGcGUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 28740 | 0.68 | 0.470584 |
Target: 5'- -aGCGCCUUGGCaucguccagCGCGGUGCGCuucucGGc -3' miRNA: 3'- gaUGUGGAGCUG---------GUGCCGCGCGuu---CC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 29117 | 0.68 | 0.470584 |
Target: 5'- uUGCugC-CGGUCAC-GCGCGCGAGGc -3' miRNA: 3'- gAUGugGaGCUGGUGcCGCGCGUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 24626 | 0.68 | 0.480738 |
Target: 5'- -gGCACgUCGAaccaCAUGGCGUGCcggcGGGc -3' miRNA: 3'- gaUGUGgAGCUg---GUGCCGCGCGu---UCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 9326 | 0.68 | 0.480738 |
Target: 5'- -cGCACgUCGG-CGCGGCGgGCGGcGGc -3' miRNA: 3'- gaUGUGgAGCUgGUGCCGCgCGUU-CC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 28673 | 0.68 | 0.480738 |
Target: 5'- -gGCgGCCUCG-CCagcGCGGCGCGCcacgucguucacAAGGu -3' miRNA: 3'- gaUG-UGGAGCuGG---UGCCGCGCG------------UUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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